RetrogeneDB ID:
retro_ecab_122
Organism:
Horse ( Equus_caballus )
Location:
1:34523005-34523492 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.76 %
Coverage:
57.73 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
TMEM41B
Parental gene aliases:
No gene alias available
Parental gene description:
transmembrane protein 41B [Source:HGNC Symbol;Acc:28948]

Genomic region (view in browser)





>retro_ecab_122
TTGCAAACATTTGCTATTCCGGGCTCTATATTTCTCAGTATACTCTTAGGGTTTCTTCAA
CCCTTTCCGCTAGCCTTATTTCTTGTTTGTTTGTGTTCTGGACTTGGTGCCTCATTCTGC
TATATGCTCTGCTATTTAGTTGTAAACAAATACGTAACAGAGAAAGCAGTAAAATGGTCA
TAGCGGGTTGAACGTCATGGAGAACATGTCATTAACTACATTATATTTTTGAGAATAACA
CCATTTCTGCCTAATTGCTAATATTATGTCTCCTGTGATAAACGTGCCATTGAAATTTTT
CTTATTGGCACTTTTCTAGGTGTCACACCTCCCTCTTTTGTAGCGATTAAGGGCGTGAAC
AACACTGTACCAGCTCACAATCACAGAGGAAGCTATTTCCTGCAACCCAGTATTTGTTCT
AACAGTTTTGGCTCTTCTTTCTATTCTGCCAGCCATCTTCCAAAAAAAACTAAAGCAACA
ATTTGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LQTFAIPGSIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVERHREHLINYIIFLRITPFLPN--WFINITSPV
LQTFAIPGSIFLSIL.GFL.PFPLALFLVCLCSGLGASFCYML.YLV....V.KY.TEKAVKWS..VERH.EH.INYIIFLRITPFLPN...........
Retrocopy
LQTFAIPGSIFLSILLGFLQPFPLALFLVCLCSGLGASFCYMLCYLV----VNKYVTEKAVKWS*RVERHGEHVINYIIFLRITPFLPNC*YYVSCDKRA


Parental protein
INVPLKVFFIGTFLGVAPPSFVAIK-AGTTLYQLTTAGEAVSWNSVFVLMILALLSILPAIFQKKLKQKFE
I...L...F.G....V.PPSFVAIK.A.TTLYQLT...EA.S.N.VFVL..LALLSILPAIF...LKQ.FE
Retrocopy
IEIFLIGTFLG----VTPPSFVAIK\A*TTLYQLTITEEAISCNPVFVLTVLALLSILPAIFXXXLKQQFE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide