RetrogeneDB ID:
retro_ecab_123
Organism:
Horse ( Equus_caballus )
Location:
1:37496714-37497205 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.05 %
Coverage:
77.46 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
NUDT9
Parental gene aliases:
No gene alias available
Parental gene description:
nudix (nucleoside diphosphate linked moiety X)-type motif 9 [Source:HGNC Symbol;Acc:8056]

Genomic region (view in browser)





>retro_ecab_123
CAGTACACTGCAGGCTCTTTCTTGGTCTGATCCATGAGGGCACGCACCCAAGTACTTGAA
AGGAACTTCTCTCCTAAATTTAATGAAAGGGTGGGCTCGTTGAGAGAGGGAGCCAGAATG
GTTTGTATGAGGTTGAAAATGGTAAACCTAGAAATCCTGCAGGTCAGATACAGCTGGTTG
CCTGAGGGCTTTGGGGATGTTGGGTCCTCAATCATCCTGCAGCTCCCATCTTAACCAGGT
GGAACAAGGATAGCAAGGGAAATAAAGTTACCCACCCTGTTTCTGGGAGAAGCATCCTGC
AATTTGTAGCCATCAGGAGGAAGGACTGTGGAAACTGGGCCATCCCACGGGGGATGGTGG
ATCCATGAGAGGTTAGTACCACAATGAGGAGAGAATTTGGTAAGGAAGCCATAATCTCCT
TACAGAAATCCAGAGCAGAAAGTCAGAAGTTGGAGAAACGATTGAAGAAACTATTCAGCC
ATGACATTTTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EYTAVSVLAGPRWADPQISESTFSPKFNE-KDGHVERKSQNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRWKRDRSGNKITHPISGKNI
.YTA.S.L.....A..Q..E..FSPKFNE.K.G.VER.SQNGLYE.ENG.PRNPAG...LV..GL.G.W..NH.A.PI.TRW..D..GNK.THP.SG..I
Retrocopy
QYTAGSFLV*SMRARTQVLERNFSPKFNE/KGGLVERGSQNGLYEVENGKPRNPAGQIQLVA*GLWGCWVLNHPAAPILTRWNKDSKGNKVTHPVSGRSI


Parental protein
LQFVAIKRKDCGEWAIPGGMVDPGEKISAALKREFGEEALNSLQKSSAEKRELEEQLQKLFSQEHL
LQFVAI.RKDCG.WAIP.GMVDP.E..S....REFG.EA..SLQKS.AE...LE..L.KLFS...L
Retrocopy
LQFVAIRRKDCGNWAIPRGMVDP*E-VSTTMRREFGKEAIISLQKSRAESQKLEKRLKKLFSHDIL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide