RetrogeneDB ID:
retro_ecab_125
Organism:
Horse ( Equus_caballus )
Location:
1:44621091-44621647 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.16 %
Coverage:
91.71 %
Frameshifts:
3
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_125
ACAATTAATGAAATAAAAAGTAATTTAAAATACTTAGAAATGCAGCTTATGTTAAAGAGG
AAAAAATTAGTGATTTAGAGGATAAAAACATAGACCTGCTATACGTGGGGGAGGAGACAT
AACTAAGATTTTTTTTTAAATGATAGAATTATTTGAGAAATATCTATCTCAATTGGGAAA
AACAACATAAGGATAATAGATATTCTGGAAGGAGAAGGGAGGGAGAAAGGAGCACAGAGC
TTGTTCAAAGAAATAATAGCTGAGATCTTCCCTAACCTGGGGAAAACTAGATTTACAAAT
ACTTGAAGCTAATAGAATGCCTAATTACATCAATGCTAAAAGACATTCTCCAAGGCATAT
AACAATAAAACTGGCAAAAGTCAACAACAAATAAAAAATATTAAGGGCAGCAAGGCTGAA
GACAATACCCTATGAAGGAACCCCTGTCAGGCTTTAAGTGGTTTTCTCAGCAGACATGCT
ACAAGCTAGGAGAGAGTGGAATGATATGTTCAAAACACTGAAAGACAAAAACTTCCAGCC
AAGAATACTCTATCCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TMDEVKKNLGSVN-NRADIIEETISSLEDRNIEILQIEEERELRLKR-NEEILQEVSKSIRKGNIRLIGIPEGEEKDKGAESLFKEIIAGNFPNL-GKEL
T..E.K.NL.....N.A...EE.IS.LED.NI..L...EE..LR....N..I..E.S.SI.K.NIR.I.I.EGE...KGA.SLFKEIIA..FPNL.GK.L
Retrocopy
TINEIKSNLKYLE/NAAYVKEEKISDLEDKNIDLLYVGEET*LRXXX\NDRII*EISISIGKNNIRIIDILEGEGREKGAQSLFKEIIAEIFPNL\GK-L


Parental protein
EIQVKEAKRIPNYITVKRHSPRHIVEKLAKVNDKEKVLRAANKKQQIITYKGAPIRLSADFSTETLQARREWSDIFKALKDKNLQPRILYP
..Q..EA.R.PNYI..KRHSPRHI..KLAKVN.K.K.LRAA..K...I.Y.G.P.RL...FS...LQARREW.D.FK.LKDKN.QPRILYP
Retrocopy
DLQILEANRMPNYINAKRHSPRHITIKLAKVNNK*KILRAARLK--TIPYEGTPVRL*VVFSADMLQARREWNDMFKTLKDKNFQPRILYP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide