RetrogeneDB ID:
retro_ecab_126
Organism:
Horse ( Equus_caballus )
Location:
1:45311534-45312001 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
55.7 %
Coverage:
72.56 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
NOL12
Parental gene aliases:
No gene alias available
Parental gene description:
nucleolar protein 12 [Source:HGNC Symbol;Acc:28585]

Genomic region (view in browser)





>retro_ecab_126
GAGATCCAGCAGCGGCTCAAGCAGCAGCGCCACCAGGAATCCTTGCAGATGCTGTCCCAG
AGAGAAGAGGTGCTGGGGGAGGCAGCCCAGCTGGACTGGCTGCTGACGACAAACATAGGG
TCTGAACAGTACGAACACGCCAACCGCACAGTCACCGCAAGCATCATCCGCAACCTAGAC
CCCTCCAGGGTTGTCCAGCTGTTCCGACTGCCCCTGCCTGAGCAAGGGGCTAGGCACGGG
TCCGAGGATGCAGCATCATCCACGGGGAAGCCCACCAGCGCCTTTCCTAGGAAGTCCAGG
GACCCCCTGCTATCCCAGGGGACAGCCGCTCTCAAGGCTTCGCTACCCGCACAGTCGTAA
AAAGGTCAAAGGCAACATCCGCCAAGGGGCCAGGACTCCACCATGAAGCCCTCAGTCCCA
GTCCTACCAGCAAGACCCAGCGCAGCCAGCTGCCAGGTAAAGCCCGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EEQKKLREERHQEYLKMLAEREEALEEADELDRLVTAKTESVQYDHPNHTVTVTTISDLDLSGA-RLLGLPSAEQGAGHGSEEEAASVEKPTRALPRKSR
E.Q..L...RHQE.L.ML..REE.L.EA..LD.L.T....S.QY.H.N.TVT...I..LD.S....L..LP..EQGA.HGSE..A.S..KPT.A.PRKSR
Retrocopy
EIQQRLKQQRHQESLQMLSQREEVLGEAAQLDWLLTTNIGSEQYEHANRTVTASIIRNLDPSRVVQLFRLPLPEQGARHGSEDAASSTGKPTSAFPRKSR


Parental protein
DPLLSQRISSLTASLHAHSRKKVKRKHPRRAQDSTKKPP-SATRTSKSQRRRLTGKAR
DPLLSQ....L.ASL.A.S.K...R.HP.R.QDST.KP..S...TSK.QR..L.GKAR
Retrocopy
DPLLSQGTAALKASLPAQS*KG-QRQHPPRGQDSTMKPS/SPSPTSKTQRSQLPGKAR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide