RetrogeneDB ID:
retro_ecab_127
Organism:
Horse ( Equus_caballus )
Location:
1:46143120-46143515 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.41 %
Coverage:
87.42 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS14
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S14 [Source:HGNC Symbol;Acc:10387]

Genomic region (view in browser)





>retro_ecab_127
GTCATCAGCCTCAGACCTCAGGTGGCTAAAGAAGAGAACGCATTTGCTGTCTGCCATATT
TTTGCAGCCTTCAGTGACTCCTTTGTCCGTGTGACCTCTCTCTTCGGCAAGGAAGCCATT
TGCCCCATGACTGGTGGGATGACAGTTAAGGTAGACCAAAATGAATCTTTGCCATATGCC
ACATGTTGGCCACCCAGGTTGTGGCTCAGAGCTGCAAGGTGCTTGGCACCACTGCCCTAC
ACATCAAACCCTGGCTCACAGTAGGAAATAGGACCAAGACCCTTGGATCTGAGGTGCACT
CAGTCCTCAGAGCGCTTGTCTGTTCAGAAAAGAAGATCGAGCAGATTGAAGATGTCATCT
CCATCCCTTCTGACAGCACCTGCAAGAAGGGAGGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAA-MLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA
VISL.PQVA..EN.F.VCHIFA.F.D.FV.VT.L.GKE.IC..TGGM.VK.D..ES.PYA..MLA.Q.VAQ.CK.LG.TALHIK...T.GNRTKT.G...
Retrocopy
VISLRPQVAKEENAFAVCHIFAAFSDSFVRVTSLFGKEAICPMTGGMTVKVDQNESLPYAT/MLATQVVAQSCKVLGTTALHIKPWLTVGNRTKTLGSEV


Parental protein
QSALRALARSGMKIGRIEDVTPIPSDSTRRKGG
.S.LRAL..S..KI..IEDV..IPSDST..KGG
Retrocopy
HSVLRALVCSEKKIEQIEDVISIPSDSTCKKGG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide