RetrogeneDB ID:
retro_ecab_128
Organism:
Horse ( Equus_caballus )
Location:
1:57249023-57249836 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
79.85 %
Coverage:
62.16 %
Frameshifts:
2
Stop codons:
0
Parental gene:
Parental gene symbol:
CYP2R1
Parental gene aliases:
No gene alias available
Parental gene description:
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:HGNC Symbol;Acc:20580]
Genomic region (view in browser)
>retro_ecab_128
TCAGCCTTTCCATGGATTGGCATCTTACCTTTTGGAAAACATCAACAGCTGCTTAGAAAT
GCAGCTGTGGCCTACGATTTTTCTCCCCAGGCTTATTGAAAAAGTTCCTGGTGACAAAAA
GCCTCAGTTGCCTCAGCATTTTGTTGGTGCTTATTTAGATGAGATGGATCAAGGTAAAAA
TGACCCATCGTCTGCTTTCTCCAAAGAAAAGCTAATTTTCTCTGTGGATGAACTCATCAT
TGCTGGAACCAAAACTATAACCAATGTGCTATGGTGGGCAGTTCTTTTCATGGCCCTTTA
TCCTAACATTCAAGGACGGGTTCAGAAGGAGCTTGATTTAATTATGGGACCCAGTGGGAA
GCCATCTTGGGATGACACATGCAAAATGCCTTATACTGAGGCAGTTTTGTGTGAAGTTTT
AAGATTCTGTAATATAGCGCCATTAGCGATTTTCCATGGAGCCTCTGTAGATGTAGTTGT
ATGTGGTGATTCCATTCCTAAAGGCAAAGCAGTTATTACAAATCTTTATTCTGTACACTT
CAATGAAGAGTACTGGAGAGACCCAGAAGTATTCTATCCTGAGCAATTTCTGGACAGCAG
TGGACTTTTTGCCGAGAAGGAAGCTTTGCTTCCTTTTTGCTTAGGAAGAAGAGATGGTCC
TGGAGAACAGCTGGCTCAGTGGAAATGTTCCTGTTTTTTACAGCATTGCTTCAGCTGTTT
CACTTGCATTCTCCAGATGAACTGGTTCCAAATCTGAAGCCCAGGTTAGGCATGACATGC
CAACCGCAGCCTTACCTCATCTGTGCAGAAAGA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.14 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 0.24 |
Parental protein coverage
Changes in the retrocopy sequence
