RetrogeneDB ID:
retro_ecab_129
Organism:
Horse ( Equus_caballus )
Location:
1:57404229-57404544 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.3 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_129
GTGGTGAACGTTCCTAAAACCCACTGGACTTTCTATAAGAAGTGTAGCAAACACCAACCC
CACAAAGTCATAGCACTAGAAGGGCAAGGATTCCCTATATGCCAAGGGAAAGTGGCATTA
TGACCGAAAGCAGAGTGGTTATAGTGGGCAGGCTAAGCTGATTTTTGGGAAAAAGGCTAA
AACTACAAAGAAGATTGTGCTGACGCTTGAATGTGTTGAGCCCAACTGCAGATGTAAGAG
AATGCTGGCTGTCAAGGGATGCAGGCATTTGAACTGGGAGGAGATCAGAAGAGAAAGGGC
CAAGTGATCCTCTTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.52
SRP021940_cerebellum 0.35
SRP021940_embryo 1.05
SRP021940_placental_villous 0.8
SRP021940_synovial_membrane 0.55
SRP021940_testis 1.84

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG-KRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCKH-FELGGDKK
.VNVPKT..TF.KKC.KHQPHKV.....G......QG.K..YDRKQSGY.GQ.K.IF.KKAKTTKKIVL.LECVEPNCR.KRMLA.K.C.H.FELGGD.K
Retrocopy
VVNVPKTHWTFYKKCSKHQPHKVIAL-EGQGFPICQG\KWHYDRKQSGYSGQAKLIFGKKAKTTKKIVLTLECVEPNCRCKRMLAVKGCRH/FELGGDQK


Parental protein
RKGQVIQF
RKGQVI.F
Retrocopy
RKGQVILF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide