RetrogeneDB ID:
retro_ecab_13
Organism:
Horse ( Equus_caballus )
Location:
11:34823126-34824221 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
98.35 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_13
ATGAGTTTGGCTGGGGGCCAGGCCCCCCGGAAGACCGCGGGGAACCGGCTTTCTGGGCTC
CTGGAGGCAGAGGAGGAAGATGAGTTCTACCAGACGACTTATGGGGGTTTCACAGAGGAA
TCAGGAGATGATGAGTATCAAGGGGACCAGTCAGACACAGAGGATGAGGTGGACTCTGAC
TTTGACATCGATGAAGGAGATGAACCATCCAGTGATGGAGAAGCAGAAGAGCCAAGAAGG
AAGCGCCGAGTAGTCACCAAAGCCTATAAGGAGCCTCTCAAGAGCTTAAGGCCTCGAAAG
GTCAGCACCCCAGCTGGTAGCTCTCAAAAGGCCAGAGAAGAGAAGGCACTGCTACCACTA
GAACTACAAGATGATGGCTCTGACAGTCGGAAGTCCATGCGTCAGTCTACAGCTGAGCAT
ACAAGACAAACATTCCTTCGGGTACAGGAGAGGCAGGGCCAGTCACGGCGGCGAAAGGGG
CCCCACTGTGAGCGACCACTGACCCAGGAGGAGCTGCTCAGGGAGGCCAAGATCACAGAG
GAGCTCAACTTACGTTCACTGGAGACATATGAGCGGCTGGAGGCTGACAAAAAGAAGCAG
GTTCACAAGAAGCGGAAGTGCCCTGGGCCCATAATCACGTATCATTCAGTGACAGTGCCG
CTTGTTGGGGAGCCAGGCCCTAAAGAAGAGAATGTCGATGTAGAAGGGCTTGATCCTGCT
CCCACGGCTTCTGCACTGACTCCCCGTGCTGGGACTGGACCCATCATCCCTCCTGCTCGC
TGCTCACGTACCTTCATCACTTTTAGTGATGATGCGACATTTGAAGAATGGTTTCCCCAG
GGGCGGCCCCCAAAGGTCCCTGTTAGAGAGGTCTGCCCGGTGACCCATCGGCCAGCCCTA
TACCGGGATCCTGTTACAGACATACCCTGCGCCACTGCTCGAGCCTTCAAGATCATCCGT
GAGGCCTACAAGAAGTACATCACTGCCCATGGACTGCCTCCCACTGCCTCAGCCCTGGGC
CCTGGCCCGCCACCTCCTGAGCCTCTCCCCGGCTCTGGGCCCCGAGCCTTGCGTCAGAAA
ATTGTCATCAAATGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.46
SRP021940_cerebellum 1.84
SRP021940_embryo 6.01
SRP021940_placental_villous 1.79
SRP021940_synovial_membrane 2.53
SRP021940_testis 4.09

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSLAGGRAPRKTAGNRLSGLLEAEEEDEFYQTTYGDRSEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRK
MSLAGG.APRKTAGNRLSGLLEAEEEDEFYQTTYG...EESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRK
Retrocopy
MSLAGGQAPRKTAGNRLSGLLEAEEEDEFYQTTYGGFTEESGDDEYQGDQSDTEDEVDSDFDIDEGDEPSSDGEAEEPRRKRRVVTKAYKEPLKSLRPRK


Parental protein
VSTPAGSSQKAREEKALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQ
VSTPAGSSQKAREEKALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQ
Retrocopy
VSTPAGSSQKAREEKALLPLELQDDGSDSRKSMRQSTAEHTRQTFLRVQERQGQSRRRKGPHCERPLTQEELLREAKITEELNLRSLETYERLEADKKKQ


Parental protein
VHKKRKCP-PIITYHSVTVPLVGEPGPKEENVDVEGLDPAPTASALTPRAGTGPIIPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPAL
VHKKRKCP.PIITYHSVTVPLVGEPGPKEENVDVEGLDPAPTASALTPRAGTGPIIPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPAL
Retrocopy
VHKKRKCPGPIITYHSVTVPLVGEPGPKEENVDVEGLDPAPTASALTPRAGTGPIIPPARCSRTFITFSDDATFEEWFPQGRPPKVPVREVCPVTHRPAL


Parental protein
YRDPVTDIPYATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK
YRDPVTDIP.ATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK
Retrocopy
YRDPVTDIPCATARAFKIIREAYKKYITAHGLPPTASALGPGPPPPEPLPGSGPRALRQKIVIK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide