RetrogeneDB ID:
retro_ecab_130
Organism:
Horse ( Equus_caballus )
Location:
1:59208650-59209096 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.33 %
Coverage:
95.51 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RBM3
Parental gene aliases:
No gene alias available
Parental gene description:
RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:9900]

Genomic region (view in browser)





>retro_ecab_130
AAGGTCTTCGTGGGAGGCCGTGGCTTCAGCACCGATGGGCAGGCGCTAGATGACCGCTTC
AGCAGCTTCGGGCCTATTTCTGAGGTGGTTGTTCTCAAAGACCAGGAGACTCAGCAATCC
TGGGGTTTTGGCTTCATCACCTTCACCCATCCACAGCGTGCCTCAGATGCCACGAGAGCC
CTGAATGGAGAGTCCTGGATGGTTGCCAGATCCCTGTGGACCACGCAGGCAAGTCAGCCC
AGGGAACCAGAGGGGGTGCCCTTGGGGCCCATGGGCGTGGTCACGGCCAGTCTAGAGGCG
GTGGGGACCTGGGCTATGGGAGTGGCAGGTATGACAGTGGACCTGAAGGATATAGATACA
GATATAGAAGGTCCAGAGACTAAGGTGGCAGAAGCCAGGGTGGTTATGACTGCGACACAG
GAGGAAATAACAGAGCCAACTACAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGES-LDGRQIRVDHAGKSARGTRGGAFGAHGRGRGYSR
K.FVGG..F.TD.QAL.D.FSSFGPISEVVV.KD.ETQ.S.GFGFITFT.P..ASDA.RA.NGES.LDG.QI.VDHAGKSA.GTRGGA.GAHGRG.G.SR
Retrocopy
KVFVGGRGFSTDGQALDDRFSSFGPISEVVVLKDQETQQSWGFGFITFTHPQRASDATRALNGES/LDGCQIPVDHAGKSAQGTRGGALGAHGRGHGQSR


Parental protein
GGGDQGYGSGRYDSRPGGYGYGYGRSRDYGGRNQGGYDRYSGGNYRDNYD
GGGD.GYGSGRYDS.P.GY.Y.Y.RSRD.GGR.QGGYD...GGN.R.NY.
Retrocopy
GGGDLGYGSGRYDSGPEGYRYRYRRSRD*GGRSQGGYDCDTGGNNRANYN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide