RetrogeneDB ID:
retro_ecab_131
Organism:
Horse ( Equus_caballus )
Location:
1:68498390-68498594 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.89 %
Coverage:
65.09 %
Frameshifts:
3
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_131
ATGGTGAATGGTCCTAAAACCTGGTGGACTTCTATAACAAGTATGGCAAGCATCATCCCT
ACCAAATGACAGAATGCAAGAAGAACAAGCTTCTCTGAATGCCCAGGGAAAGCAGCATTA
TGACAGGAAACAGAGTGGCGATGATGGACAGACTAAACTGATCTTCCAGAAAAAGGCTAA
ACTGCAAAGAAGATTGGGCTAAGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVNVPKTRRT-FCKKCGKHQPHKVTQYKKGK-DSLYAQGKRRYDRKQSGYGGQTKPIFRKKAK-TTKKIVLR
MVN.PKT..T.F..K.GKH.P...T..KK.K..SL.AQGK..YDRKQSG..GQTK.IF.KKAK.T.KKI.LR
Retrocopy
MVNGPKTWWT/FYNKYGKHHPYQMTECKKNK/ASLNAQGKQHYDRKQSGDDGQTKLIFQKKAK/TAKKIGLR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide