RetrogeneDB ID:
retro_ecab_132
Organism:
Horse ( Equus_caballus )
Location:
1:69306314-69306533 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.67 %
Coverage:
55.15 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL27
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L27 [Source:HGNC Symbol;Acc:10328]

Genomic region (view in browser)





>retro_ecab_132
CTTGCTAAGCCGTCAAAGATCAAGTCTTTTGCGAAAGATAACTGCAGTTACCTCACACCC
ACAGGACATTTTGTGGACACCCTGTTGGATGAAACTGTTGTCAACAAGGCCATCTTCTAT
GACTTTGCATTCAAACGTAAGGCCAGGAGGGAGGCAAAGTTCAAGTCTGAGGCAATCAAA
AATAGGCAAAACAAGTGATTCTGCCAAAAGCTGTGATTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF
.AK.SKIKSF.K..N...L.PT...VD..LD.TVVNK..F.D.A.KRKARREAK.K..E..K...NK.F.QKL.F
Retrocopy
LAKPSKIKSFAKD-NCSYLTPTGHFVDTLLDETVVNKAIFYDFAFKRKARREAKFK-SEAIKNRQNK*FCQKL*F


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide