RetrogeneDB ID:
retro_ecab_133
Organism:
Horse ( Equus_caballus )
Location:
1:71464472-71464687 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
71.62 %
Coverage:
55.3 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_133
ATACACATCAAGTTGGTAGAGGCCCTTGTGCTGAACACCAAATCACCCTAATTAATATTG
ATTACAAGAAACTAGGGGAATGGGTAGGCTTCTGTAAGACTGACAGAGAGGGAAAACTCT
AGAAAGTGGTTGGTTGCAGATATGTGGCAGTTAAGGATTATGGCCAAGAGTCTCAGGGCA
AGGATGTCATCAAAGAGTAACTCAAATGCAAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MYVKLVEAL-CAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCKK
...KLVEAL.CAEHQI.LI..D..KKLGEWVG.CK.DREGK..KVVGC..V.VKDYG.ESQ.KDVI.E..KCKK
Retrocopy
IHIKLVEAL/CAEHQITLINID-YKKLGEWVGFCKTDREGKL*KVVGCRYVAVKDYGQESQGKDVIKE*LKCKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide