RetrogeneDB ID:
retro_ecab_134
Organism:
Horse ( Equus_caballus )
Location:
1:73664828-73665291 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.78 %
Coverage:
62.86 %
Frameshifts:
4
Stop codons:
5


Parental gene:
Parental gene symbol:
YWHAQ
Parental gene aliases:
No gene alias available
Parental gene description:
tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide [Source:HGNC Symbol;Acc:12854]

Genomic region (view in browser)





>retro_ecab_134
AGGTCCTCCTGAAGGGTCATCTGGAGCAGCAAGAGGAAAACTGTCACTCCTTAGAAGAAG
CTGAAACTATGATAAGGACTACCATCAGAAGAAAGTGTAGTCTGAACTGAGATCCATCGG
TGCCCTAATCCTGGAATTGTTGGATAATTATTAACAGTCAATGCAACCAATCCAGAGAGT
AAGGTCTTCAGTCTGAAAATGAAAGGGATCACTTCCAGGACCTTGCTGACGTTGCATGTG
GTGAGGATCAAAAACAAATGATAGATAATTCCCAAGGAATTTAGCAACAAACATTTGATA
TAAACCAGAAAGAGATGCAACTCACACACACAGTCCACCTGGGGCTGGCTCCTCACTCTT
TTGTGTTTTGCTAGGAACTCCTTAATAACCCGGAGCTTGCTATACACTGACTAAAACAGC
TTTTGATGAGGCCATCATAGAACTTGATGCACTGAACAAAGAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RSAWRVISSIEQKTDTSDKKLQL-IKDYREK-VESELRSICTTVLELLDKY-LIANATNPESKVFYLKMKG-DYFRYLAEVACGDDRKQTIDNSQGAYQE
RS..RVI.S...KT.T..KKL.L..KDY..K.V.SELRSI....LELLD.Y.L..NATNPESKVF.LKMKG.D.F..LA.VACG.D.KQ.IDNSQG..Q.
Retrocopy
RSS*RVIWSSKRKTVTP*KKLKL\DKDYHQKKV*SELRSIGALILELLDNY/LTVNATNPESKVFSLKMKG/DHFQDLADVACGEDQKQMIDNSQGI*QQ


Parental protein
AFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELAC-TLAKTAFDEAIAELDTLNED
.FDI..KEMQ.TH...LGLA....VF..E.LNNPELA..TL.KTAFDEAI.ELD.LN.D
Retrocopy
TFDINQKEMQLTHTVHLGLAPHSFVFC*ELLNNPELAI/TLTKTAFDEAIIELDALNKD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide