RetrogeneDB ID:
retro_ecab_135
Organism:
Horse ( Equus_caballus )
Location:
1:79087655-79087916 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.23 %
Coverage:
53.33 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
ACP1
Parental gene aliases:
No gene alias available
Parental gene description:
acid phosphatase 1, soluble [Source:HGNC Symbol;Acc:122]

Genomic region (view in browser)





>retro_ecab_135
ATCACCCAAGGAGTTTTCAAAAAACTTGTAACAGGTCAAAACGTTCCAGATAATTGGAGG
ATAGACAATGCAGTGACATTCATGTATGAAACAGGAAACCCCGCTCATTATTGAGGGCAG
AACTGGACGAAGAAGCACAGTATCATGAATCATATTGCCCAGGAGGATACCCAGGAAGAC
TCTGACACCTTTAATTATATACTATGTATGGATGAAAGTGATCTGAGACATCTGATCCGA
AAAAGTAATCAAATTAATAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IAEAVFRKLVTDQNISDNWRIDSAATSTYEIGNPPDYRGQSCMKRHGIPMSHTARQVTKEDFATFDYILCMDESNLRDLNRKSNQVKN
I...VF.KLVT.QN..DNWRID.A.T..YE.GNP..Y.GQ...K.H.I.M.H.A...T.ED..TF.YILCMDES.LR.L.RKSNQ..N
Retrocopy
ITQGVFKKLVTGQNVPDNWRIDNAVTFMYETGNPAHY*GQNWTKKHSI-MNHIAQEDTQEDSDTFNYILCMDESDLRHLIRKSNQINN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide