RetrogeneDB ID:
retro_ecab_136
Organism:
Horse ( Equus_caballus )
Location:
1:81992760-81993548 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.06 %
Coverage:
89.69 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_136
AGGCAAAGGAATACATTCCAAGCAAAGGAACAAGACAAAACCCCAGAAAAAGAACTAAAT
GAAATAGAAATAATCTACCTGACAAAGAGTTCAAACAAAAACTCATAAGGATGTTCACTG
GTCTTGGAAGAAGACTGGATGACCTCAGTGAGAACATCAACAAAGAATTGGAAAATATAA
AAAAGAACCAATCAGTCATGAAAAATACAACACCAGAAATGAAAAATTCACTAGAGGGAC
CCAACAGCAGAGTAGATGATACAGAAAAACAGATCAGTGAGCTGAACAAAAGACTAGGGG
AAGTCACCCAAGCTGAATAGATAAAAGAATTAAAAAGAATGAGAACAGTGTAAGGGAACT
CTGGGACAACATCAAGTACACTAACATTCATAATAGGTGAAGCAGAAAGAGAAGAGAGAG
ACAAAGGGGCAGAGAATCTATTTAAAGAAATAATAGCTGAAAAATTCCCTAACATAAGGA
AGGAAACAGACATCCAGGTACAGGAAGCACAGAGAGCACCAAACAAGATAAAATCAAAGA
GACTCACACCAAGACACATTATAATTAAAATGTCCAAAATTAAAGATAAAGGGAGAATCC
TAAAAGTTGTCAGAGAAAGGCAACAAATGACATACAAAGGAAACCCCATAAGGCTATCAG
CTGACTTCTCAGCAGAAACCTTACAAGTTAGAAGGGAGTGGTAACATATGTTTAAAGTGC
TGAAAGGAAAAAATCTACAGCCAAGAATACTCTACCTGACATGGTTATCATTCATAATGG
ATGGAGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQD-KTPEKELNETEISNLPDKVFKQK-VKLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDER
RQR.TFQ.KEQD...P.K........NLPDK.FKQK.....T.LGRR.D..SEN.NKELENIKK.QS.MKNT..EMKNSLEG.NSRVDDTE..IS.L..R
Retrocopy
RQRNTFQAKEQD/QNPRKRTK*NR-NNLPDKEFKQKLIRMFTGLGRRLDDLSENINKELENIKKNQSVMKNTTPEMKNSLEGPNSRVDDTEKQISELNKR


Parental protein
LEEVTQAEQIKEK-MKKTDSLRDLWDNIKCTKIR-ITGVPEEEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGR
L.EVTQAE.IKE...K...S.R.LWDNIK.T.I..I.....EE.DKGAE......IAE.FP...KE.D.QVQEAQ.APN.I..KR.TPRHII.K.S....
Retrocopy
LGEVTQAE*IKEL/KKNENSVRELWDNIKYTNIH\IGEAEREERDKGAENLFKEIIAEKFPNIRKETDIQVQEAQRAPNKIKSKRLTPRHIIIKMSKI-K


Parental protein
NKERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLARSSFIMEGE
.K.RILK..RERQQ.TYKGN.IRLSAD.SAETLQ.RR.W...FKVL..K...PRILYL...SFIM.GE
Retrocopy
DKGRILKVVRERQQMTYKGNPIRLSADFSAETLQVRREW*HMFKVLKGKNLQPRILYLTWLSFIMDGE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide