RetrogeneDB ID:
retro_ecab_137
Organism:
Horse ( Equus_caballus )
Location:
1:90823330-90824002 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.87 %
Coverage:
92.53 %
Frameshifts:
3
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_137
GAGATGAAAAACACAATGGGTGAGATAAAGCAAGAATACAGATTCCCTGAACAATAGAGC
TGAAACCATGGAGGAACGAATCACCAAAATTGAGGCTAGAAACAGAGACACACTTCAGAT
GGAGGAATAGAGAGAAGTAAGGCTAAAATGAAATGAAGAAAGACTCCGAGAAATATCCGA
CTCGATTAGGAAATGCACTATAAGAACTATAGGTATTCCAGAGAGTGAAGAGAAGGAGAA
TGGAGCAGAAAGCTTCAATAGCAGAGAACTTCCCAAAACTGGGAAAGAGGATGGAAATCC
ATGTGGAAGAGGGTACCAGATCTCCTAAATACGTCAATGTATACAGACCTACTGAAAGGC
ATACAGCAGAGAAACTGGCAAAAGTGAATTAGAAATAAAAAATACTAAGGGCAGCAATGC
AGAAGAAAATACCTTACAAAGGAACCCCTATCGGGCTCTCAGTGGATTTCTCTGCAGAAA
CCTTTCAGGCTGGGAGAGACTGGAATGACATATTCAAATCCTTGAAGGAGAAAAACTTTC
AGCCAAGGATACTTTATCCAGTGAAAATATCCTTCAGATATGATGGAGAAATAAAAACTT
TCCCAGATAAACAAAAGCTAAGGGAGTTCATAGCCACAAGACTACCCTGTGCAAGAAATC
CTCAAGAAGGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EMKNTTLEMKS-SLERLNSRVSDTHEQMSEIDERLEEISQAEQKKEKRIRQNENSLRELWDNIKCTNIRFIGVPEGEERDKEAEN-RVAENFPNLKKETD
EMKNT..E.K......LN.R.....E....I..R.....Q.E...E.R...NE..LRE..D.I....IR.IG.PE.EE....AE....AENFP.L.K...
Retrocopy
EMKNTMGEIKQ\NTDSLNNRAETMEERITKIEARNRDTLQMEE*REVRLK*NEERLREISDSIRKCTIRTIGIPESEEKENGAES\SIAENFPKLGKRME


Parental protein
IHIQEAQRTPKKISPKRATPRHIIIKISKMNDKERIPRAARQKKISYKGTPIRLSVHFSTETLQARRDWNDIFKTLKDKNLQPRILYPAKIFFRYEGEIK
IH..E..R.PK.....R.T.RH...K..K.N.K..I.RAA.QKKI.YKGTPI.LSV.FS.ET.QA.RDWNDIFK.LK.KN.QPRILYP.KI.FRY.GEIK
Retrocopy
IHVEEGTRSPKYVNVYRPTERHTAEKLAKVN*K*KILRAAMQKKIPYKGTPIGLSVDFSAETFQAGRDWNDIFKSLKEKNFQPRILYPVKISFRYDGEIK


Parental protein
SFPDNQKLRDFVAT-SPPLQEILKKA
.FPD.QKLR.F.AT...P.QEILKKA
Retrocopy
TFPDKQKLREFIAT\DYPVQEILKKA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide