RetrogeneDB ID:
retro_ecab_139
Organism:
Horse ( Equus_caballus )
Location:
1:112756536-112757238 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
69.55 %
Coverage:
59.95 %
Frameshifts:
5
Stop codons:
0


Parental gene:
Parental gene symbol:
SERPINE2
Parental gene aliases:
No gene alias available
Parental gene description:
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 [Source:HGNC Symbol;Acc:8951]

Genomic region (view in browser)





>retro_ecab_139
TATGTTAAAAATGAAACAGGGATTTGATTAACAATCTCCTTTCCCTGGATCTTATCAATG
GTGTGTTCACTGGACTGGTCCTTGTCAGTGCAGTGCATTTTAAAGGTTTAGAGAAATCAA
AGTTTCAACCTGAGAACACAAAGAAATATATGTTTTTGACAGCTGATAGAAAATCCTATC
AGTGCTGATGCTAGTTCAGCTCTGCATGTTCTGGTGGGGGGCAGCAAGCACCCCTAATGA
TTTATGGTACAACTTCATTGAATGCCCTACCGTGGGGAAAATATCAGTATGCTGATTCTG
CTATCCACCTCCACTCCACTGTCGGCCATCACCCGCCACATCAGCATGCAAACCATAGAC
CACTGATGTGAGCACCATGGCACCAAGAGCACACAGCTGATCCTGCCCAAGTTCACAGCC
ATAGAACAAACTGATTTGAAGGAGCCGCTGAAAGTTCTTGGTGTTACTGAGATACTTAAT
CTATCAAAGGCAAATTTTGCAAAGATAACAAGGTCAGAAAACCTTCATGTTTCTCATGTC
TTGCAGAAAGCAAAGGTTGAAGTCAATGTAGACAGAACCAAAGCTTCAGCAGCAACAACT
AGGAATCTAATCACAAGAGCATCACCTTGGTTTATAGAAGACAGAACTTTTTTATCTTTC
ATCCTACATAATCCCACAAGTGCTGTCTTACTCAGGGGCAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
WVKNET-RGMIDNLLSPDLIDGVLTRLVLVNAVYFKGLWKSRFQPENTKKRTFVAADGKSYQ-VPMLAQLSVFRCGSTSTPSDLWYNFIE-LPYHGESIS
.VKNET.R..I.NLLS.DLI.GV.T.LVLV.AV.FKGL.KS.FQPENTKK..F..AD.KSYQ.V.ML.QL..F..G..STP.DLWYNFIE..PY.GE.IS
Retrocopy
YVKNET/RDLINNLLSLDLINGVFTGLVLVSAVHFKGLEKSKFQPENTKKYMFLTADRKSYQ/VLMLVQLCMFWWGAASTPNDLWYNFIE/MPYRGENIS


Parental protein
MLIALPTESSTPLSAIIPHISTKTID-SWMSTMVP-KRVQVILPKFTAVAQTDLKEPLKVLGITEMFEPSKANFAKITRSENLHVSHILQKAKIEVSEDG
MLI.L.T..STPLSAI..HIS..TID....STM.P.K..Q.ILPKFTA..QTDLKEPLKVLG.TE....SKANFAKITRSENLHVSH.LQKAK.EV..D.
Retrocopy
MLILLST--STPLSAITRHISMQTID\TDVSTMAP/KSTQLILPKFTAIEQTDLKEPLKVLGVTEILNLSKANFAKITRSENLHVSHVLQKAKVEVNVDR


Parental protein
TKASAATTAILIARSSPPWFIVDRPFLFFIRHNPTGAVLFMGQ
TKASAATT..LI.R.S.PWFI.DR.FL.FI.HNPT.AVL..G.
Retrocopy
TKASAATTRNLITRAS-PWFIEDRTFLSFILHNPTSAVLLRGR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide