RetrogeneDB ID:
retro_ecab_142
Organism:
Horse ( Equus_caballus )
Location:
1:123714474-123714869 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.11 %
Coverage:
55.19 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_142
GAGAAAAGAGATCAGTGTAATAAAAATATTTTAAGAAAACATTTTCCAAATTTGATGAAA
GATATAAACACACAGATTCAAGAAGCTCAGCAAACATGCAAACAAAATAAATACCAAGAA
ATCTATGACCAGACACACACTAATAAAATTTTAGAAAACTGAAGATAAAAATATCTCGAA
AGGAACCAGAAAAATTTAGCATTACTTATAGGGGGAAAAGTGTTCAAATGACTGTGAATT
TCTCTTCAGAAAACAAGCAAGCCAGAAGGAAGTGGAACATTTTTAAAGTACTGAAAGAAA
AGAACCTTCAACCCAGAATTCTACATCCAGCAAAAATATTCTTTGGAGATGAAAGTGAAA
TAAAGATATTCTTAGATGAAGGAAAACTAAGAGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EERDKEAENRVAENFPNLKKETDIHIQEAQRTPK-KISPKRATPRHIIIKISKMNDKERIPRAARQK-KISYKGTPIRLSVHFSTETLQARRDWNDIFKT
E.RD....N.....FPNL.K.....IQEAQ.T.K.KI..K....RH..IK..K..DK..I....R....I.Y.G......V.FS.E..QARR.WN.IFK.
Retrocopy
EKRDQCNKNILRKHFPNLMKDINTQIQEAQQTCK\KINTKKSMTRHTLIKF*KTEDKN-ISKGTRKI\SITYRGKSVQMTVNFSSENKQARRKWN-IFKV


Parental protein
LKDKNLQPRILYPAKIFFRYEGEIKSFPDNQKLRD
LK.KNLQPRIL.PAKIFF..E.EIK.F.D..KLR.
Retrocopy
LKEKNLQPRILHPAKIFFGDESEIKIFLDEGKLRE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide