RetrogeneDB ID:
retro_ecab_143
Organism:
Horse ( Equus_caballus )
Location:
1:127495407-127496113 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.83 %
Coverage:
70.57 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]

Genomic region (view in browser)





>retro_ecab_143
GTCTTCACTACCTTGGAGAAGGCTGGGGCTGACTTGAAGGGTAGAGTCAAAAGGTCATCA
TCATCTCTGTCTTTTCTGCAGATGCACCCACGTTTGTGATGGGCATGAACCATGAGAAGT
ATGACAACTCCCTCAAGATTGTCAGCAATGCCTCCTGCACTACCAACTGCTTGGCCCCCC
TGGCCAAGGTCATCCATGACAACTTTGGCATTGTGGAGGGACTCATGACCAGAGTCCATG
CCATCACTGCCACCCAGAAGATGGTGGATGGCCCCTCTGGGAAGCTGTGGCATGACCAGC
TGTGGGGCTGCCCAGAACGTCATCCTTGGTTCTACTGCTGCCGCCTAGGCTGTGGGAAAG
ATAATCCCTGAGCCGAATGAGAAGCTCACTGGCATGGCCTTCCATGTCCTCACCCTCAAT
GTGTCAGTCATGAATCTGACTTGCTGTCTGGAGAAAACTGCCAAATATGATGACATTAAG
AAGGTGGTAGAGCAGGCATCAAAGGATGCCTTAACAGGCATCTTGGGCTACACTGAGGAC
TAGTTTGTCTCTGTGATTTAACAGTGATACCCACTCTTCCACCTTCAACACTGAGGCTTG
CACTGCCCTCAAAGACAACTTTGTCAAGTTCATTTCCTGGTATGACAGTGAATTTCACTA
CAGCAACAGGGTGGTGGACATCATAGTCCACATGGCCTCTAAGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VFTTLEKAGAH-LKGGAKRVII-SAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRD
VFTTLEKAGA..L.G....VII.S..SADAP.FVMG.NHEKYDNSLKIVSNASCTTNCLAPLAKVIHD.FGIVEGLMT.VHAITATQK.VDGPSGK.W.D
Retrocopy
VFTTLEKAGAD/LEG*SQKVIIISVFSADAPTFVMGMNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTRVHAITATQKMVDGPSGKLWHD


Parental protein
-GRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVS-CD-FNSDTHSSTF
...GAAQN.I..ST.AA.AVGK.IPE.N.KLTGMAF.V.T.NVSV..LTC.LEK.AKYD.IKKVV.QAS...L.GILGYTED..VS.CD.FNSDTHSSTF
Retrocopy
\SCGAAQNVILGSTAAA*AVGKIIPEPNEKLTGMAFHVLTLNVSVMNLTCCLEKTAKYDDIKKVVEQASKDALTGILGYTED*FVS/CD/FNSDTHSSTF


Parental protein
DAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE
...A..AL.D.FVK.ISWYD.EF.YSNRVVD...HMASKE
Retrocopy
NTEACTALKDNFVKFISWYDSEFHYSNRVVDIIVHMASKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide