RetrogeneDB ID:
retro_ecab_144
Organism:
Horse ( Equus_caballus )
Location:
1:129983112-129985244 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
86.83 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
3
Parental gene:
Parental gene symbol:
POLR3E
Parental gene aliases:
No gene alias available
Parental gene description:
polymerase (RNA) III (DNA directed) polypeptide E (80kD) [Source:HGNC Symbol;Acc:30347]
Genomic region (view in browser)
>retro_ecab_144
ATGGCAAATGAAGAGGATGACCCAGTCGTACAGGAGATCGACGTGTACTTGGCCAAAAGT
CTGGCAGAGAAGCTCTATCTGTTTCAGTACCCTGTGCACCCAGCCTCGATGACCTAAGAT
GACATTCTGTACCTCTCAGCCAAGATCAAGCCCAAGCAGCAGAAGGTAGAGCTTGAGATG
GCCGTCGACATCCTGAATCACAACTATTGTCGCAGCAAAGGGGAGCAGATTGCACTGAAT
GTGGGTGGCGCCTGTGCCAATGAGACCAGCACATGTTCCTAGAAGCTGATGGACAGCAGA
CGTTCGGCTCCTCCCAGACCACCAGTAACACGTCCTGTTACGCTGCTGCGCTCTACAGGC
AAGGTGAGCTCCACCTGACACCTTTACATGGCATCCTGCAGCTGCAGCCCAGCTTCTCCT
ACCTGGACAAGGCAGATGCCAAGCACCGAGAGAGGGAGGCAGCCAGTGAGGCGAGAGACT
CTTCACAGGCCAAGGCAGAAGAAGATGTGAAGCAGATCACGGTCCGGTTCTCCCTGCCCG
AGTCGGAACAGGCCTGCCAGCGTCGTGTGCAGTCCTACAAGTTCCTGCAGAAGAAGCATG
TCAGAGAACCCTGGGTCCACCTGCACTACTATGGCCTGAGGGACAACCGCTCTGAGCACG
AGCGCCAGTACCTGCTGTGCCAGGGCTCCAGCGGGGTTGAGAACATGGAGCTCGTCAAGT
TACCGAGTGAGTACCTCATAATGCTGATGCCCCCCCAGCCAGGAGCAGGAGAAAGACAAA
CCTGTGGCCCCCAGCAATGTCCTGTCCAGGGCCCAGCTATGCACCCTGCCTCTGGCTGAT
CAGATCAAGGTCCTGATGAAGAATGTGAAGGTCATGCCTTTTGCCAACTTGATGAATCTC
CTAGGCCCCTCCCTCGACTCTGTGGCTGTTCTGCGTGGCATCCAGAAGGTGGCTATGTTA
GTCCAAGGAAACTGGGTGGTGAAGAGTGGCATCCTGTACCCCAAGGACTCCTCCAGCCCT
CACAGTGGCGTGCCTGCCGAGGTGCTCTGCAGGGGCCGAGACTTTGTTATGTGGAAGTTC
ACGCAGAGCTGGTGGGTGGTAAGGAAAGAGGTGGCAATGGTGACTAAACTCAGTGCAGAG
GATGTGAAGGACTTTCTGGAGCACGTGGCGGTAGTGAGGATCAGCAAAGGCTGGGAGTTC
ATACTGCCTTACGATGGAGAGTTCGTCAAGAAGCATCCGGATGTGGTCCAGTGGCAGCAC
ATGCTGTGGATGGGCATCCAGGCCAAGCCAGAAAAAGTTTATAATTTTGTGAAGGAAACT
ATGCCAAAGAAACCAGATGGACAATCAGGGCCTGCTGGGCTGTTCTCTGGGGACCAGCGG
GTCCAAGTAGCCAAGAGCAAGGCCCAGCAGAACCACGCATTGCTGGAACAGGAGCTGCAG
CGGAGGAAGGAACAGATCCAGGCATCCACGGTCCTGCCTGGTATTCGGATCAAGGAGGAG
CCCATGAGCGAGGAAGGAGAGGAAGAGGAAGAGCGGGAAGTGGAGGAAGACGAGGAGCCC
ATGGACACCTCACCCAGTCATGGCCTCCACAATAGGCTGGCCAGTGGGCTGCCTGCGGGC
AGGCAGCAGGCGGGGACAGCTTCAGCGGGCACCCGCCCCCAGGCTGTGCCAACACCCCTG
TGGCCCAGGAACTGAGGGCCTTCGTGGAGGCCACCTTTCAGAGATAGTTTGTGCTCACAC
TGAGCAAACTCAAGCGTCTCTTCAACCTGCACTTGGTCAGCCTGCCCCATGGCCACATGG
TCTTCAGTGGCATCTTGGACGGCATGCTGCAGGATACGATGCTGGCCGCCGGTTGCAAGC
AGATACTGTTGCCTTTTCCCCCACAGACTGCTGCTTCTTCGGATGAGCAGAAGGTGTTCG
CCCTCTGGGAGTCTGGAGACGTGAGTGGTCAGCATCGACAGGTTTTGCTTGAAATTTTTT
CCAAAAACTACCGGGTACTCCGGAACATGATCCAGTCTTGGTTGACTCAAGAGTGTGGAG
AAGATCTAAGTAAACAGGAGGTGGATAAAGTGCTACAGGGCTGCTGTGTAAGCTGTGGTG
GCATGTGGTACCTTAAAGGGACGGTGCAGTCT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.07 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.23 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
