RetrogeneDB ID:
retro_ecab_145
Organism:
Horse ( Equus_caballus )
Location:
1:132139856-132140213 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.24 %
Coverage:
60.1 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
APOO
Parental gene aliases:
No gene alias available
Parental gene description:
apolipoprotein O [Source:HGNC Symbol;Acc:28727]

Genomic region (view in browser)





>retro_ecab_145
GAAATGTACTCCCAAACGAAGCCCAAGATGCAAAGTTTGGTTCCCTGGGGGTTAGACGGC
TACGAGTATCTCCAAAATGCACCTCTTGGATTTTTTCCAAGACTTGATGCTATTGGTTTT
GCTGGCATTGTTGGACTCCTTGTGGCTAGAGGTCCAAAAATAAAGCAGCTGGTGTACACA
CCTGGTTTCATAGGACTGGCTGCCTCTCTTTATTATCCACAATAAGCCATCATATTTGTC
CAGGTCAGTGGGGAGAAATTATATGACTGGGGTTTACAAGGATACATAGTCGTAGAAGAT
TTATGGAAGGAGAACTTCCAAAAGCCAGGAAATGTGAAGAATTCACCCGGAAATAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ETYSQTKPKMQSLVQWGLDSYEYLQNAPPGFFPRLGVIGFAGIVGLLLARGSKIKKLVYPPGFMGLAASLYYPQQAIVFVQVSGEKLYDWGLRGYIVVED
E.YSQTKPKMQSLV.WGLD.YEYLQNAP.GFFPRL..IGFAGIVGLL.ARG.KIK.LVY.PGF.GLAASLYYPQ.AI.FVQVSGEKLYDWGL.GYIVVED
Retrocopy
EMYSQTKPKMQSLVPWGLDGYEYLQNAPLGFFPRLDAIGFAGIVGLLVARGPKIKQLVYTPGFIGLAASLYYPQ*AIIFVQVSGEKLYDWGLQGYIVVED


Parental protein
LWKENFQKPGNVKNSPGNK
LWKENFQKPGNVKNSPGNK
Retrocopy
LWKENFQKPGNVKNSPGNK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide