RetrogeneDB ID:
retro_ecab_146
Organism:
Horse ( Equus_caballus )
Location:
1:132598412-132598825 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.12 %
Coverage:
54.33 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
RBFA
Parental gene aliases:
No gene alias available
Parental gene description:
ribosome binding factor A (putative) [Source:HGNC Symbol;Acc:26120]

Genomic region (view in browser)





>retro_ecab_146
AGAAAAATGTTTTGGTATGAAAGTCTTTCCTTGGCATCTCACTTTTCCTCAAATCATGTG
AGCTGGAATTCCTAATGAAGAACACCTCAAAGGAAACCAAGAAAGAGGACCATGTGCACT
TAAGGGGCCCGGATGGCCCTTCTCTATAAAACACTGACGGATTTGCTGGGCATTTCTGAA
GTGAACCAAGAGATCTAAGACCCAAACATGGAGTTTTCCAAGGTGTCTCTTACTTGAGAC
CTCTCAGCTTGCTGTGTATATTGGAAGACAACTCTTTTTGCTAATAGAATGAGCACACTG
AAGCCATCTCATAGAAAAGCACTGTACACATGAGGCATTATTTGATGTCTCAGCAGATCC
TGAGGAATGAGCTGCCTATGGTTTTTGTCCTAGTCATACAAAATGCAGCTCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RKKFWYEGPSLSSH-LTYKPSQLEFLTKSTSKKTKKEDHVRLRALNG-LLYKALTDLLCTPEVSQEVYDLNLELSKVSLTSDFSACRVYWKTTLSAEQ-N
RK.FWYE..SL.SH.L..K...LEFL.K.TSK.TKKEDHV.LR...G.LLYK.LTDLL...EV.QE..D.N.E.SKVSLT.D.SAC.VYWKTTL.A...N
Retrocopy
RKMFWYESLSLASH/LFLKSCELEFLMKNTSKETKKEDHVHLRGPDG\LLYKTLTDLLGISEVNQEI*DPNMEFSKVSLT*DLSACCVYWKTTLFANR/N


Parental protein
SHTEATLRRSAAHVRHLLMSQQTLRNVPPIVFVQDKENAAL
.HTEA....S..H.RH.LMSQQ.LRN..P.VFV....NAAL
Retrocopy
EHTEAIS*KSTVHMRHYLMSQQILRNELPMVFVLVIQNAAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide