RetrogeneDB ID:
retro_ecab_148
Organism:
Horse ( Equus_caballus )
Location:
1:138424661-138425569 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
72.99 %
Coverage:
61.37 %
Frameshifts:
6
Stop codons:
6
Parental gene:
Parental gene symbol:
CCT4
Parental gene aliases:
No gene alias available
Parental gene description:
chaperonin containing TCP1, subunit 4 (delta) [Source:HGNC Symbol;Acc:1617]
Genomic region (view in browser)
>retro_ecab_148
GTGGCTAATTCTGACAAAACCAGAGTTGAAAAGACTAAGATTGGGCTTATTCAGTTTAGC
TTATCTGCTCCCAGAACAGATATGGATAATCAAACAGTAATTTCTGATATGCCCGGATGG
ACTGAGCGCTTCGAGAGGAGAGAGCCTGCATTCTATATTTAGTGAACCAAATTTTAAAAA
CAGGATATAGTATGCTTCTCATATAGAAGTCTATTCTTAAGAGAGGCTCTTAGTGATCTT
TCATGACATCTCATTAACAAAATGAAGATGATGGTTAAGGATACGGAAAATGAAGACGTT
GAAGTTGTTTGTAAGACAGTTGGAACCAACCCAGTTGCTCATTTTGACCAATTCACTCCT
GACCTGCTGGGTTTGGCTGAGTTAGCTGAGGGGGTCCATTTAAATGGTTCTGGCAAACTA
CTCAAGGTTACAGGCTGCGCACGCCCTGGAAAAAGTTACAGTTGCTGTTCGTGGTTCTAA
AAAATTGGTGATTGAAGAAGCTGAGCGCTCCATTCACGACGCGTGATGTGTTATTCGCTG
TTTAGTGAAGAGGAGAGCTCTTATTGCATGACATGGTGTGCCAGAACTAGAGTTGGCCCT
GTGGTTAACTGAGTATTCATGAACATTGAGTGGATGGGATCCTGCTGCGTTCGTGCCTTT
GCAGGTGTTATGGAGGTCATTCTACCGACGCTATCTGAAACTGCTGGCCTGAGTCCCGTT
TCTGCAGTAACAGAACTAAGGAACTGGCATGCCCAGAGAGAAAAACTACAGGCATTAATG
TCCAAAAGGATGGTATTTCCAGTGTTTTGGAGGAACTGGTTGTCCAGCCTTTGTTGGTTT
CAGTCAGTGTGCTGACTCTAGCAACTGATACTGTCTGGATCAGTCTGCAAATTGATGATG
TGGTAAAC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
