RetrogeneDB ID:
retro_ecab_149
Organism:
Horse ( Equus_caballus )
Location:
1:139456092-139456326 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.52 %
Coverage:
58.16 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
FAU
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquitin-like protein fubi and ribosomal protein S30 [Source:RefSeq peptide;Acc:NP_001157337]

Genomic region (view in browser)





>retro_ecab_149
CAGTGTGGGGTGGAGGCAGCTCTGACCACTCTGGAAGTAGCCACCTGCATGCTTGGAGGT
GAAGTCCATGGTTCCCTGGCCACTGCTGGGAAAGTAAGAGGTCAGACTCCAAAGGTGGCC
AAACAGGAGGAAAAAAAGGAGACAGGTCAAGCCAAGCAGTGGATGCAGTACAACCGACAC
TTTGTCAACATTGTGCCCACCTTTGGCAAAAAGAAGGGCCCCAATGCCAACTCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QCGVEA-LTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVSESVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNANS
QCGVEA.LTTLEVA..MLGG.VHGSLA.AGKVRGQTPK....VAKQE.KK..TG.AK..MQYNR.FVN.VPTFGKKKGPNANS
Retrocopy
QCGVEAALTTLEVATCMLGGEVHGSLATAGKVRGQTPK----VAKQEEKKE-TGQAKQWMQYNRHFVNIVPTFGKKKGPNANS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide