RetrogeneDB ID:
retro_ecab_15
Organism:
Horse ( Equus_caballus )
Location:
29:28396396-28396846 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.68 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
CALM2
Parental gene aliases:
CALM2, CALM
Parental gene description:
calmodulin 2 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1445]

Genomic region (view in browser)





>retro_ecab_15
ATGGCTGAGAAGCTGTCTGAAGAGCAGGTGGCCGAGTTCAAGGAGGCCTTCTCCAGTGTT
GACAAGAATGGGGATGGCACCATCAACACCCAGGAGCTGGGCGCCGTGATGCAGGCCTTG
GGCCACAGTCTGTCGGAGGCCGAGTTGAACGAGCTCATCGCCAGGGTGGACTCTGATGGC
GATGGCGTCATCAACTTCCAAGAGTTCCTGGCGGAGATGGTCAAGAGGAGGAAGGCCTGG
GGCAGTGAGCAGGACCTGCAGGGGGTCTTCCGTGCCTTTGACCTGGACGGTGACGGCCAC
ATCAACGTGGATGAGCTCAAGCAGGCCATAGCCAAGCTAGGGGATGAGGTTTCCGAGGAG
GCGCTGGAAGTCATGATCCGCCAGGCTGACTTGGACCAGGACGGGAAGGTGAGCTACGAG
GAGTTCGTGCGCATCCTCACCCAGAAGTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.35
SRP021940_embryo 0.0
SRP021940_placental_villous 3.17
SRP021940_synovial_membrane 0.55
SRP021940_testis 0.36

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGY
MA..L.EEQ.AEFKEAFS..DK.GDGTI.T.ELG.VM..LG....EAEL...I..VD.DG.G.I.F.EFL..M....K...SE......FR.FD.DG.G.
Retrocopy
MAEKLSEEQVAEFKEAFSSVDKNGDGTINTQELGAVMQALGHSLSEAELNELIARVDSDGDGVINFQEFLAEMVKRRKAWGSEQDLQGVFRAFDLDGDGH


Parental protein
ISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK
I...EL......LG.....E....MIR.AD.D.DG.V.YEEFV...T.K
Retrocopy
INVDELKQAIAKLGDEVSEEALEVMIRQADLDQDGKVSYEEFVRILTQK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide