RetrogeneDB ID:
retro_ecab_150
Organism:
Horse ( Equus_caballus )
Location:
1:139808405-139810515 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
99.57 %
Coverage:
95.91 %
Frameshifts:
1
Stop codons:
1
Parental gene:
Parental gene symbol:
PRKRIR
Parental gene aliases:
No gene alias available
Parental gene description:
protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor) [Source:HGNC Symbol;Acc:9440]
Genomic region (view in browser)
>retro_ecab_150
AAACACTTTGAGACCTCTATGATCTGTCGAAACTAGTCCTTATAGGACAGTTCTTCGAGA
TAATGCAATACCAACAATATTTGATCTTACCAGCCATTTGAACAATCCACATAGTAGACA
CAGAAAACGAATAAAAGAATTGAGTGAAGATGAAATCAGGACACTGAAACAGAAAAAAAT
TGATGAAACGTCTGAGCAGGAACAGAAACATAAAGAAATAAACAACAGCAGTGCTCAGAA
GCCCAGTGCAGAAGAGGGAGGTGAAGAACAGGATGAAGACATTTTACCTTTAACCCTTGA
AGAGAAGGAAAACAAAGAATACTTAAAATCTTTATTTGAAATTTTGATTCTTATGGGAAA
ACAAAACATACCTCTGGATGGACATGAAGCTGATGAAATCCCGGAAGGTCTCTTTACTCC
TGATAACTTTCAAGCCCTGCTGGAGTGCCGGATAAATTCTGGTGAGGAGGTTCTGAGAAA
GCGCTTTGAGACAACAGCAGTTAACACGTTGTTCTGTTCGAAAACACAGCAGAAGCAGAT
GTTGGAGATCTGTGAGAGCTGCATCCGGGAAGAAACCCTCAGGGAGGTGAGAGACTCTCA
CTTCTTTTCCATTATCACTGACGATGTCGTGGACATAGCAGGGGAAGAGCACCTGCCTGT
GTTGGTGAGGTTTGTTGATGAATCTCATAACCTGAGAGAGGAATTCGTGGGCTTCCTGCC
TTATGAAGCTGATGCAGAAATTTTGGCTGTGAAATTTCACACTACAATAACTGAGAAGTG
GGGATTAAACATGGAGTATTGCCGTGGTCAGGCTTACATTGTGTCCAGTGGATTTTCTTC
CAAAATGAAAGTTGTTGCTTCTAGACTTTTAGAGAAATATCCCCAAGCCATCTACACACT
CTGCTCTTCCTGTGCCTTAAATATGTGGTTGGCAAAATCTGTGCCTGTTATGGGAGTGTC
TGTTGCATTAGGAACAATTGAGGAAGTTTGTTCCTTTTTCCATCGATCACCACAACTGCT
TTTAGAACTTGACAATGTAATCACTGTCCTCTTTCAGAACAATGAAGAACGGGGTAAAGA
ACTGAAGGAGATTTGCCATTCTCATTGGACAGGCAGGCATGATGCTTTCGAGATTTTAGT
GGACCTCCTCCAGGCACTTGTTTTATGTTTAGATGGTATAAATAGTGACACAAGTATTAG
ATAGAATAACTGTATAGCTGGCCGAGCATTTGTCCTCTGTAGTGCAGTAACAGATTTTGA
TTTCATCGTTACCATTGTTGTTCTTAAAAATGTTCTATCTTTTACAAGAGCCTTTGGGAA
AAATCTCCAGGGGCAAACCTCTGATGTCTTCTTTGCAGCCAGTAGCTTGACTGCAGTGCT
GCATTCACTAAATGAAGTGATGGAAAATATTGAAGTTTATCATGAATTTTGGTTTGAGGA
AGCCACAAATTTGGCAACCAAACTTGATATTCAAATGAAGCTCCCTGGGAAATTCCGCAG
AGCACAGCAAGGTAACCTGGAATCTCAGCTAACCTCTGAGGGTTACTATAAAGAAACTCT
GAGTGTCCCAACAGTGGAACACATTATTCAGGAACTGAAAGATATATTCTCAGAACAGCA
CCTCAAAGCTCTTAAATGCTTATCTCTGGTCCCGTCTGTCATGGGACAGCTCAAGTTCAA
CACGTCAGAGGAGCATCATGCTGACATGTACAGAAGCGACTTACCCAATCCTGACACGCT
CTCGGCCGAGCTGCACTGTTGGAGAATCAAGTGGAAACACAGAGGGAAAGATATAGAGCT
TCCATCCACCATTTATGAAGCCCTCCATCTGCCAGACATCAAGTTTTTTCCTAATGTTTA
TGCACTGCTGAAGGTCCTTTGTATCCTTCCTGTGATGAAGGTTGAGAATGAACGCTATGA
AAACGGGCGGAAGCGTCTCAAAGCATACCTGAGGAACACTTTGACAGACCAAAGGTCGAG
TAACTTGGCTTTGCTTAACATAAATTTTGATATAAAACATGATCTGGATTTAATGGTGGA
CACATATATCAAACTCTATACAGCTAAGTCGGAGCTTCCTACAGAGAATTCAGAAACCAT
TGAGAATACC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.1 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
