RetrogeneDB ID:
retro_ecab_151
Organism:
Horse ( Equus_caballus )
Location:
1:148353677-148353950 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.14 %
Coverage:
71.65 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
NUTF2
Parental gene aliases:
No gene alias available
Parental gene description:
nuclear transport factor 2 [Source:HGNC Symbol;Acc:13722]

Genomic region (view in browser)





>retro_ecab_151
GCTGCACATTTGTCCTGGGGGGGAGAACAGTTCCAAGGAAAAGCAGCCATCCTGGGGGAG
CTGACGAATATGCCATTCCAAAAAATCCAGCGTATTATCACATCCTATGATCATCAGCCA
GTTTCCAATAATTCCATCCTTACTCTGGTTGTGGGGAAGCTGAAGGTGGATGAAGAAATG
ATCACTGAGTTTCACCAGTTATTTGTTCTCAAGAATATGAATCACAAATGGATCTGCACT
AGTGATATTTTTAGAGCAGCTTTGTGTAATTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDPIMGFHQMFLLKNINDAWVCTNDMFRLALHNF
A..L.W.G.QFQGKAAI...L...PFQKIQ..IT..DHQP.....I...VVG.LK.DE..I..FHQ.F.LKN.N..W.CT.D.FR.AL.NF
Retrocopy
AAHLSWGGEQFQGKAAILGELTNMPFQKIQRIITSYDHQPVSNNSILTLVVGKLKVDEEMITEFHQLFVLKNMNHKWICTSDIFRAALCNF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide