RetrogeneDB ID:
retro_ecab_152
Organism:
Horse ( Equus_caballus )
Location:
1:159027667-159028328 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
87.84 %
Coverage:
75.17 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
CCNG1
Parental gene aliases:
No gene alias available
Parental gene description:
cyclin G1 [Source:HGNC Symbol;Acc:1592]
Genomic region (view in browser)
>retro_ecab_152
AAACTGCTCCACCAGCTGAATGCCCTGTTGGAACAGGAGTCCGGATGTCAGCCAGAGGTC
TGTGGCTTGAGACTAATTGAATCTGCACACGATAATGGTCTGAGAATGACTGCAAGGCTC
AGGGAATTTGAAGTAAAAGCTCTTAGTCTAACTCAGTTCTTTGGCTTCAACACAGAGACG
TTTTCTCTAGCTGTGAATTTATTGGAGAGTTTCCTTTCCAAAATGGACGTACCACCCAAG
CAGCTTGGGTGTGTTGGGCTGAGCTGCTTCTATTTGGCTGTAAAATCAATAGAAGAGGAA
AGGAATGTCCCATCGGCAACTGATTTGATCCAAATAAGCCAGTATAGGTTCACGGTTTCA
GACTTGGTGAGAAAGGAAAAGATTGTGTTGGAGAAGGTGTGTTGGAAAGTCAAAGCTGCT
ACTGCCTTTCAATTTCTGCCAACTCTATTATTCACTCACTCAAGGGAATTTGCCATTTGA
AAGGAAGAATGGCCTTAATTTTGAAAGACTAGAAGTTCAACTTAAGGCATGTTACTGCAG
GATCATATTTTCTAAAGCAAAGCTTTCTGTTTTGGCATTGTCTATGACTCCATTGGAGAG
CCAAGCCCAGAAGTGTGTAGATTTAACAGAAGGAGTAGAATGTCTTCAGAAGCATTCCAA
G
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
