RetrogeneDB ID:
retro_ecab_153
Organism:
Horse ( Equus_caballus )
Location:
1:160868234-160869162 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
69.87 %
Coverage:
71.2 %
Frameshifts:
2
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_153
TTGATATAATTTGCACCTGGAGCTCATGGACACTATAGTCCTTTTGATGATAGGAATGGA
ATCATAGCCCATGCTTTTGGACTTGGACCTGGTATTGGAGGAGACGCACATTTTGATGAG
GCTAAAATCTGGACTGAAAGCTGTAAAGACACAACTTGTTCCTAGTTGCTGTTCATGAGC
TTGGTCATCCCTTGGGTCTTGGCTATTCCCATGATCCAAAGCCCATAATGTTCCCCCCCC
CCCCCAGTTATATTGACCCCAACACATTTCACCTCTTTGCTGATGACATACATGGCATTC
AGTCTCTCTATGGAGCCCCATAAAATTAGCAACCCTCATCAAATCCTGACAGTACAGACT
CAGCTACCTGTGACCCCAATTTTAGTTTTGATCCTGTCACTATAGAGGGAGATGAAATCT
TTTTCTTTAAAAACAAGTTCTTCTGGTGGAAGCTTTCTGAGAGTCCATAGAACGGTGTTA
GTTTAATTTCTTTCTTATGGCCAATCTTACCATCTGGCATTCAAGCCACTTATGAAATTG
GAGCCAGAAATGATGTTTTTCTTTTTAAAGATGCTAAGTACTGGTTAGTCATCAATTTAA
GATCACAATCAAACTATCTCAAGAGCATACATTCTTTGGGCTTCCCCTACTCTGTGAAAA
AAATTGATGGAGCTGTTTTTAACCCACTTCTCTATAAGACCTGCTTCTTTCTAGATAACC
AATACTGGAGGTATGATGAGAAGAGACAATACATAGACCCCAATTATTCCAAATTGATTA
CCATGTGCTTCCCAGAAATTGGGCATAAATTGATTCAATCTTCTATTATAACTGACAAGA
CTATTTCTTCCAGGGGTCTGAGATACTTGAATACGATGTCCTATCCCATTGTGTCACCAA
AAGGCTGAAAAGCAATATCAAGTTTGGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MIQFAHGAHGDYSPFDGRNGILAHAFGPGPGIGGDTHFDEAEIWTKSYKGT-NLFLVAVHELGHSLGLGHSHDPKAIMFPTY-SYIDLSTFRLSADDIRG
.I.FA.GAHG.YSPFD.RNGI.AHAFG.GPGIGGD.HFDEA.IWT.S.K.T.NLFLVAVHELGH.LGLG.SHDPK.IM.....SYID..TF.L.ADDI.G
Retrocopy
LI*FAPGAHGHYSPFDDRNGIIAHAFGLGPGIGGDAHFDEAKIWTESCKDT/NLFLVAVHELGHPLGLGYSHDPKPIMXXXXXSYIDPNTFHLFADDIHG


Parental protein
IQSLYGAPEKPRPSSKPDSTDPTVCDPNMSFDAVTTVGDKIFFFKDRFFWRKLPKSPEINVGLISSLWPTLPSGIQAAYEIGARNHVFLFKDDKYWLISN
IQSLYGAP....PSS.PDSTD...CDPN.SFD.VT..GD.IFFFK..FFW.KL..SP...V.LIS.LWP.LPSGIQA.YEIGARN.VFLFKD.KYWL..N
Retrocopy
IQSLYGAP*N*QPSSNPDSTDSATCDPNFSFDPVTIEGDEIFFFKNKFFWWKLSESP*NGVSLISFLWPILPSGIQATYEIGARNDVFLFKDAKYWLVIN


Parental protein
LRQQPNYPRSIHSLGFPSHVKKIDAAVFNPHFYKTYFFVDNQYWRYNERRQLMDPGYPKQTTTYFPGVGPK-IDGVFYYNRYYYFLQGSNILEYDVLSRR
LR.Q.NY..SIHSLGFP..VKKID.AVFNP..YKT.FF.DNQYWRY.E.RQ..DP.Y.K..T..FP..G.K.ID..FYYN...YF.QGS.ILEYDVLS..
Retrocopy
LRSQSNYLKSIHSLGFPYSVKKIDGAVFNPLLYKTCFFLDNQYWRYDEKRQYIDPNYSKLITMCFPEIGHK/IDSIFYYN*QDYFFQGSEILEYDVLSHC


Parental protein
VTKIMKSNTELG
VTK..KSN...G
Retrocopy
VTKRLKSNIKFG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide