RetrogeneDB ID:
retro_ecab_154
Organism:
Horse ( Equus_caballus )
Location:
1:168583997-168584254 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
90.8 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
SNRPF
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide F [Source:HGNC Symbol;Acc:11162]

Genomic region (view in browser)





>retro_ecab_154
ATGAGTTTGCCCCTCAATCCCAAACCTTTCCTCAATGGATTAACAGGAAAGCCAGTAATG
GTGAAACTTAAGTGAGGAATGGAGTACAAAGACTACCTGGTATCTCTAGATAGCTATATG
AACACGCAGCTTCCAAACACGAAGAATACATAGATGGAGCATTGTCTGGACATCTGGGTG
AAGTTTTAATAAGGTGTGATAATGTCCTCTATATCAGGGGTGTTGAAGAAGAGGAAGAAG
ATGGGGAAATGAGAGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.1
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANT-EEYIDGALSGHLGEVLIRCNNVLYIRGVEEEEEDGEMRE
MSLPLNPKPFLNGLTGKPVMVKLK.GMEYK.YLVS.D.YMN.QL.NT.EEYIDGALSGHLGEVLIRC.NVLYIRGVEEEEEDGEMRE
Retrocopy
MSLPLNPKPFLNGLTGKPVMVKLK*GMEYKDYLVSLDSYMNTQLPNT/EEYIDGALSGHLGEVLIRCDNVLYIRGVEEEEEDGEMRE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide