RetrogeneDB ID:
retro_ecab_155
Organism:
Horse ( Equus_caballus )
Location:
1:8154211-8154520 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.35 %
Coverage:
58.76 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_155
GACAGAAATATAGAAATGCTTCAGGTGGAGGAAGAGAGAGAACTAAGACTTAAAAAAATG
AAGAAATTTTTTGAGAAACATTTGACTCAATTAGGAAATGCAATAAGGATTATAGGTATT
CCAGAGGGAGAAGAGAGGAAGAAAGGAGCAGGGAGCTTGTTCAAAGAAATAATAGCTGAG
AACTTCCCAAACCTGGGGAAAAAACTAGACTTACAAGTATATGAAGCCAATAGAACTCTT
AATTACATCAATGCAAAAAGACCTTCTCCAAAGCACATAATAGTAAAAGTGGCAAAAGTC
AATGAGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DRTFEIIQSEENKEKRMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNLGKKLDLQVHEANRTPNYIKAKRPSPRHIVLKLVK
DR..E..Q.EE..E.R.KK.K....EK.LT.....IRIIGIPEGEE..K...SLFKEIIAENFPNLGKKLDLQV.EANRT.NYI.AKRPSP.HI..K..K
Retrocopy
DRNIEMLQVEEERELRLKKMK-KFFEKHLTQLGNAIRIIGIPEGEERKKGAGSLFKEIIAENFPNLGKKLDLQVYEANRTLNYINAKRPSPKHIIVKVAK


Parental protein
VNDK
VN..
Retrocopy
VNEE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide