RetrogeneDB ID:
retro_ecab_157
Organism:
Horse ( Equus_caballus )
Location:
1:13461009-13461395 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.21 %
Coverage:
80.0 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_157
TGCCGTGGACAGGGAACTGATCCTACGTCTGCCCTGGCCCCAAAGATTGGTCCCTAGTCC
ATCTCCTAAAGAGTTAGTGACAACATCACCAAGGCAACTGGTGATGGAAGGAGCTAAGGA
CAGCAGTGACACTGACCCTTCAGAACAGATAGGCTAGACTGTAGTGGTCATTTTTACCCC
TTCTCTGACCATCAGAGCCCCAGAACCAGCCAGGAATAGAGAGAAACAGAAAACACTGAG
AAAGGTGGAAACGTCACTGTTGATGAGACGGTCAGCATCATCCAACACATGAGGCACAGA
ACCGCAGCCGAAGATCTCTCTGGAACATCAGTGAGGTCCTGGGGGCTGTCCAACCTGTGG
GCTACACTGCCCCCGGTCCCCATCCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
CTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGD-WKGLRITVKLTIQNRQAQI-EVVPSASALIIKALKEPPRDRKKQK-NIKHSGNITFDEIVNIA
C.G.....TSALAPKIGP...S...V.D.I.KATGD.WK.LR..V.LT.QNR.A....VV.....L.I.A..EP.R.R.KQK.N....GN.T.DE.V.I.
Retrocopy
CRGQGTDPTSALAPKIGP*SIS-*RVSDNITKATGD/WKELRTAVTLTLQNR*ARL/VVVIFTPSLTIRA-PEPARNREKQK/NTEKGGNVTVDETVSII


Parental protein
RQMRHRSLARELSGT-IKEILGTAQSVGCNVDGRHP
..MRHR..A..LSGT.I.E.LG..Q.VG....G.HP
Retrocopy
QHMRHRTAAEDLSGT/ISEVLGAVQPVGYTAPGPHP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide