RetrogeneDB ID:
retro_ecab_158
Organism:
Horse ( Equus_caballus )
Location:
1:32416083-32416504 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
81.12 %
Coverage:
76.22 %
Frameshifts:
2
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_158
GAAGCTAATTTACCCTGTACATGTAAAGTGCATTTTCCTGATCCAAACAAGCTTCATTGC
TTTCAGTTAACCATAACTCCAGATGAGGGTTACTACCACGATGGAAATTTTCAGTTTGAA
ACTGTAGTTCCCACTGTGTACAACATGGTACATCCCAATGTGAATGCTTGACCAGGATCT
GGCACCCCAACATCACTGACACAGGTGAAATATGTCTAAGTTTACCCAGAGAACATTCAA
GTGACAGTACTGGCTGGACCCCCACTAGAACATTGAAGGATGTCGTTTGGAGGTTAAACT
CTTTATTTACTGATCTTTTGAATTGTGATGATCCATTGAATATTAAAGCTACAGAACACA
TTTGTGGGACAAGGAGGACTTCCAGAATAAAGCTGAAGACTTCGTTAAGCGTTATGGCAG
A

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKV-KCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGL
EANLPCTCKVHFPDPNKLHCFQLT.TPDEGYY..G.FQFET.VP..YNMV.P.V..CLTRIWHPNIT.TGEICLSL.REHS.D.TGW.PTRTLKDVVW.L
Retrocopy
EANLPCTCKVHFPDPNKLHCFQLTITPDEGYYHDGNFQFETVVPTVYNMVHPNV/ECLTRIWHPNITDTGEICLSLPREHSSDSTGWTPTRTLKDVVWRL


Parental protein
NSLFTDLLNFDDPLNIEAAEH-HLRDKEDFRNKVEDYIKRYAR
NSLFTDLLN.DDPLNI.A.EH.HL.DKEDF.NK.ED..KRY.R
Retrocopy
NSLFTDLLNCDDPLNIKATEH/HLWDKEDFQNKAEDFVKRYGR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide