RetrogeneDB ID:
retro_ecab_159
Organism:
Horse ( Equus_caballus )
Location:
1:43658049-43658412 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
79.34 %
Coverage:
72.89 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
IMMP1L
Parental gene aliases:
No gene alias available
Parental gene description:
IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) [Source:HGNC Symbol;Acc:26317]

Genomic region (view in browser)





>retro_ecab_159
ATTCTCCCTGGTGTTCTGGGAAAGACCTTTCGCTTTGTTGGCTATACTATTCAGTATGGC
TGTAGGGCTCATTGTGCTTTTGAATATGTTGGTGATGTTGTCACATGTCCTGGACCATCA
ATGGAGCCTACAATTCAAAATTCAGATATCGTCTTTGCAGAAAATCTTAGTCAATATTTT
TATGGTATCTGAAGAGGTGACATAGCGATTACAAAAAGCCTGAGTGATCTAAAATAAAAT
ATTTGTAGAAGAGTAACTGGTTTGGAAGGAGACAAAATCCTCACCAGTAGACCATCAGAT
TTCTGTAAATGTCATAATTATGTGTCAACAGGTCACATTTGGTTAGAAGGTGACAGTCTA
CAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MLRGILGKTFRLVGYTIQYACIAHCAFEYVGGVVMCSGPSMEPTIQNSDIVCAENLSRHFYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTSRPSD
.L.G.LGKTFR.VGYTIQY.C.AHCAFEYVG.VV.C.GPSMEPTIQNSDIV.AENLS..FYGI.RGDI.I.KS.SD.K.NIC.RV.GLEGDKILTSRPSD
Retrocopy
ILPGVLGKTFRFVGYTIQYGCRAHCAFEYVGDVVTCPGPSMEPTIQNSDIVFAENLSQYFYGI*RGDIAITKSLSDLK*NICRRVTGLEGDKILTSRPSD


Parental protein
FFKSHNYVPTGHVWLEGDNLQ
F.K.HNYV.TGH.WLEGD.LQ
Retrocopy
FCKCHNYVSTGHIWLEGDSLQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide