RetrogeneDB ID:
retro_ecab_162
Organism:
Horse ( Equus_caballus )
Location:
1:53599166-53599718 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.09 %
Coverage:
100.0 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]

Genomic region (view in browser)





>retro_ecab_162
AAAATGATTTGCTACTCACTTGACCTAGCTGACTCCACAAAATCATATAAATCAAGAGAA
TCAAAGCTTCACGTTCACTTAGAGAACACCTGTGAAACTGCCCAGGCCGTCAGGGGAATG
CATATATGAAAAGCCATCAAGTATCTGAAAGATGTCACTTTGTAGAACCAATGTGTGCCA
TTCTGTCCTTACAATGGCAGAGTTGGCAAGTATGCCCAAGCCAAACAGTGGGACTGGATT
AGGGTACGTGGCTCAAAAAGAGTGCTGAATTTTTGCTGCATGTGCTTAAAAATGCACCAA
GTAATGCTGCACTTAAGAGTTCAGATGTAGATTCTCTGGTCATTGAGTACTTTCAAGTGA
ACAAAGCCTCCAAGATGTGCCACCATACTTACAGAACTCATGCTAGGATTGCCCCATGCT
TGAACTCTCCCTGCCACATTGAGGTGATCCTTACTGAAAAAGAACATTTTTTCCTAAATC
AGAAGAGAGTTTAAACAGAAGAAAAAGATATTCCAGAAGAAACTGAAGAAACAAAAACTT
ACAGTCTGGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KMVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQ-GRWPKKSAEFLLHMLKNA
KM..YSLD....TKS.KSR.S.L.VH..NT.ETAQA..GMHI.KA.KYLKDVTL..QCVPF..YNG.VG..AQAKQW.W...G.W.KKSAEFLLH.LKNA
Retrocopy
KMICYSLDLADSTKSYKSRESKLHVHLENTCETAQAVRGMHI*KAIKYLKDVTL*NQCVPFCPYNGRVGKYAQAKQWDWIR/GTWLKKSAEFLLHVLKNA


Parental protein
ESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQ-IVPKPEE-EVAQKKKISQKKLKKQKLMARE
.SNA.LK..DVDSLVIE..QVNKA.KM...TYR.H.RI.P...SPCHIE.ILTEKE....PK.EE.E..QKKKI.QKKLKKQKL...E
Retrocopy
PSNAALKSSDVDSLVIEYFQVNKASKMCHHTYRTHARIAPCLNSPCHIEVILTEKEH/FFPKSEE/EFKQKKKIFQKKLKKQKLTVWE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide