RetrogeneDB ID:
retro_ecab_163
Organism:
Horse ( Equus_caballus )
Location:
1:56846579-56846870 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
62.0 %
Coverage:
80.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_163
ATTGTTCCTGTAAAGAATGGTGGCAGGACGAAAAGCTGTTCAGCCAGCCATAATGTAGAG
ACTAGAGAATATTCCATCAACATTCAAAAGTGTATTCATGGAGTGGGCTTCAGGAAGCGT
GCCCCTCAGGTACTCAGAGAGATCCAGAAATCTGCCATGCAGGAGATGGGAGCTCCAAAT
ATGCACATTGATACCAGGCTCAAAAAAACTATCTGGGCCAAAGGAATAAGGAATGTTTCA
TACTGCGTCTGTGTGGTGGTGTCCAGGAAACGTAATGAGGATTCACCTAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.14
SRP021940_placental_villous 0.27
SRP021940_synovial_membrane 0.1
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPN
..P.K.GG...K..SA...V.TREY.INI.K.IHGVGF.KRAP..L.EI.K.AM.EMG.P...IDTRL.K..WAKGIRNV.Y...V..SRKRN..EDSPN
Retrocopy
IVPVKNGG-RTKSCSASHNVETREYSINIQKCIHGVGFRKRAPQVLREIQKSAMQEMGAPNMHIDTRLKKTIWAKGIRNVSYCVCVVVSRKRN--EDSPN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide