RetrogeneDB ID:
retro_ecab_165
Organism:
Horse ( Equus_caballus )
Location:
1:61641334-61642000 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
79.65 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
2
Parental gene:
Parental gene symbol:
ATP6V1E1
Parental gene aliases:
No gene alias available
Parental gene description:
ATPase, H+ transporting, lysosomal 31kDa, V1 subunit E1 [Source:HGNC Symbol;Acc:857]
Genomic region (view in browser)
>retro_ecab_165
ATGACCCACAGTGATGCTGACATGCAAAAGCAGATTAAGCATATGATAGCTTTTACTGAA
CAAGAAGCCAATGAGAAAGCAAAAGAAATAGATTTGAAAGCAAAAGAATTCAATGATAAG
AAAGGTCTTATTGTACAAACCCAAAGACTGAAGATCATGGAATACTATGAGAAGAAAGAA
AAGCAGATTGAGCAATAGCAGAAAATTCAGATGTCCAATTTGATGAATCAAGCGAGGCTC
AAAGTCCTCAGAGCAAGAGATGACCTTACTACAGACCTACTAAATGAAGCAAAACAGAGA
CTCAGCAAAGTGGTAAAAGATGCAGCCAGGTACCAAGTCCTATTGGTCCTCCAGAGTTCA
TACCAGTTGTGGGAGCCCTGAACGATTGTTCATTGCAGGAGACAGGATTTCCCTCTGGTA
AAGGTTGCAGTGCAAAAAGCAATCCCTATTTACAAAATCACCAACAAAGATGATGTTGAT
GTCCAAACTGATCAGGAGGCCTACCTGCCTGAGAAAATACCTGGTGGAGTTGCGATCTAT
AATGGGGATTGTAAAATAAATGTTTCCAATACCCCGGAAAGCCAGCAGGATCTCATAGCC
CAGCAGATGATGCCAGAAGTACAGTTAGCCTTGTTTGGTGCAAATGCCAACAGAAAATTT
TTGAAC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.26 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.23 |
| SRP021940_testis | 0.12 |
Parental protein coverage
Changes in the retrocopy sequence
