RetrogeneDB ID:
retro_ecab_166
Organism:
Horse ( Equus_caballus )
Location:
1:62988368-62989283 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
92.46 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
STK16
Parental gene aliases:
No gene alias available
Parental gene description:
serine/threonine kinase 16 [Source:HGNC Symbol;Acc:11394]

Genomic region (view in browser)





>retro_ecab_166
ATGGGCCACACACTGTGTGTCTGCTCTCGGGGAACTGTCATCATTGACAATAAGCGCTAC
CTCTTCATCCAGAAACTAGGGGAGGGTGGGTTCAGCTATGTGGACCTAGTAGGGGGGTTA
CATGATGGACACTTCTACACCCTGAAGCGAATCCTGTGTCACGAGCAGCAGGACCAGGAA
GATGCCCAATGAGAAGCAGACATGCATCGCCTCTTCCATCACCCCAACATCCTTCACCTT
GTGGCTTATTGTCTGAAGGAGCGGGGCGCTAAACATGAGGCCTGGCTGCTGCTACCTTTC
TTCAAGAGAGATACACTGTGGACCGAGACAGAATGGCTCAAGGACAAAGGTAACTTCTTG
ACTGAAGATCAAATCCTTCAGCTGCTGCTGGGTATCTGCAGAGGACTTGAGGCCATTCAC
GCCAAGGGTTATGCCTACAGGGACATGAAGCCCACTAATATCTTGCTTGGAGATGAGGGG
CAGCCAGTTTTAATGGACTTGGGTTCCACGAATCAAGCATGCATCCACGTGGAGGGCTCC
CTCCAGGCTCTGGCCCTGCAGGACTGGGCAGCTCAGGGGTGCACCATCTCCTACTGGGCC
CTGGAGCTCTTCTCCGTGCAGAGCCACTGTGTCATCGATGAGGGGACTGATGTCTGGTCC
CTAGGCTGCGTGTTATATGCCATGATGTTTGGGGAAGGCCCTTATGACATGGTGTTCCAG
AAGGGTGACAGTGTGGCCCTTGCTGTGCAGAACCAACTGAACATCCGGCAGAGCCCCAGG
CATTCTGCAGTGATGTGGCAGCTGCTGGCCTCGATGATGACTGTGGACCCGCAGCAGCGC
CCTCACGTTCCTCTCCTCCTAAGTCAGTTGGAAGCACTGCAACCCTCAGCTCCAGGCCAG
CACACTACCCAAATC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGHALCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREDAQREADMHHLFHHPNILRLVAYCLKERGAKHEAWLLLPF
MGH.LCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLV.GLHDGHFY.LKRILCHEQQD.EDAQ.EADMH.LFHHPNIL.LVAYCLKERGAKHEAWLLLPF
Retrocopy
MGHTLCVCSRGTVIIDNKRYLFIQKLGEGGFSYVDLVGGLHDGHFYTLKRILCHEQQDQEDAQ*EADMHRLFHHPNILHLVAYCLKERGAKHEAWLLLPF


Parental protein
FKRGTLWTEIERLKDKGNFLTQDQILQLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALALQDWAAQRCTISYRA
FKR.TLWTE.E.LKDKGNFLT.DQILQLLLGICRGLEAIHAKGYA.RD.KPTNILLGDEGQPVLMDLGS.NQACIHVEGS.QALALQDWAAQ.CTISY.A
Retrocopy
FKRDTLWTETEWLKDKGNFLTEDQILQLLLGICRGLEAIHAKGYAYRDMKPTNILLGDEGQPVLMDLGSTNQACIHVEGSLQALALQDWAAQGCTISYWA


Parental protein
PELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLNIPQSPRHSAAMRQLLASMMTVDPQQRPHIPLLLSQLEALQPSAPGQ
.ELFSVQSHCVIDE.TDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLNI.QSPRHSA.M.QLLASMMTVDPQQRPH.PLLLSQLEALQPSAPGQ
Retrocopy
LELFSVQSHCVIDEGTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQNQLNIRQSPRHSAVMWQLLASMMTVDPQQRPHVPLLLSQLEALQPSAPGQ


Parental protein
HTTQI
HTTQI
Retrocopy
HTTQI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide