RetrogeneDB ID:
retro_ecab_167
Organism:
Horse ( Equus_caballus )
Location:
1:65164155-65165954 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
97.34 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1
Parental gene:
Parental gene symbol:
IFT74
Parental gene aliases:
No gene alias available
Parental gene description:
intraflagellar transport 74 homolog (Chlamydomonas) [Source:HGNC Symbol;Acc:21424]
Genomic region (view in browser)
>retro_ecab_167
ATGGCCAGTAATCACAAACCTTCAGCAGCTCGCCCTGTGTCACGAGGTGGAATTGGGTTG
ACAGGAAGGCCTCCTTCTGGAGTACGACCTCCATCAGGAAATATTCGAGTGGCAACTGGA
ATGCCCCCTGGAACAGCAAGACCAGGCTCTCGTAGTGGTCCCATAGGAACAGGAGGAGTT
CTGTCTTCTCAAATCAAAGTTGCTGATCGTCCTGTAACACAGCAAGGTTTGAGTGGAATG
AAAACTGGGATGAAAGGTCCCCAGAGGCAAATATTAGACAAATCTTACTATCTTGGGCTT
CTTCGAAGTAAAATAAGTGAACTTACAACAGAAATTAATAAACTTCAGAAAGAAATAGAA
ATGTACAATCAAGAGAATTCAGTATATTTGTCATATGAAAAGAGAGCTGAGACTTTAGCT
GTTGAAATCAAAGAGTTCCAAGGACAAATAGCAGACTACAACATGTTGGTAGATAAACTT
AATACCAATACTGAAATGGAAGAAGTAATGAATGATTACAACATGCTTAAAGCTCAAAAT
GATCAAGAAACACAAAGTATGGATATCATATTTACTGAAAGACAAGCGAAGGAAAAACAT
ATTAGAAGTGTAGAAGAAGAAATTGAACAGGAAAAACAAGCAGCAGATGGCATTATCAAA
AATATGTCTCCTGAAAAGCAAGTCAAATACATGGAGATGAAAACAACAAATGAAAAATTG
TTGCAGGAACTAGATACACTTCAGCAACAACTAGATTCACTGAACATGAAAAAAGAGAGT
CTGGAAGCTGAAATAGCACACTCCCAGGTAAAACAGGAGGCTGTATTGCTGCATGAAAAG
CTTTATGAGTTGGAGTCCCATCGAGATCAAATGATTGCGGAAGACAAAAGCATGGGATCT
CCGATGGAAGAGAGAGAGAGATTACTTAAGCAGGTTAAAGAAGATAATCAGGAAATAGCC
AGCGTGGAGTGACAGTTAACAGATATAAGAGAAAAAATAAATCAATTTAATGAAGAAATT
AGACAGCTTGACATGGATTTAGAAGAACACCAAGGTGAAATGAATCAGAAGTACAAAGAG
CTCAAAGAAAGGAAGGAAAGTATGGACACTTTTATTGAGACTTTTGAGGAAACTAAGAAT
CAGGAGCTGGCACGGAAGGCACAGTAGAAGCCCACATCATCGCCCTTCTGGAGCACTGTA
GTCGAAATATAAATTGTATGAAACAGATATCCTCTATCACCAATCAAGAGCTGAAGATGA
TGCAGGATGATCTCAATTTTAAATCTACTGAGATGCAGAAATCACAAAGTACAGCTAGGA
ATTTGACTTCGGATAGTCAGCGTCTACAGTTGGATCTACAGAAAATGGAACTTCTGGAAA
GTAAGATGACTGAGGAACAACAGTCTCTGAAAAGCAAAATTAAGCAAATGACAACTGATC
TGGAGACGTATAATGATTTGCCAGCTTTAAAATCATCAGGTGAAGAAAAGAAAAAGAAAT
TACATCAGGAGAGAACAGTATTATTGACCCGCAGAAATGCCTTTAAGAAATTAATGGAGA
AGCTAAACATAGAATATGAGGCACTAAAAACACAATTGCAAGAAAATGAGACGCAGTCTC
AGCTTACAAATTTGGAGAGGAAGTGGCAACACCATGAGCAAAATAATTTTGTGATGAAAG
AATTCATAGCAACCAAGAGTCAAGAGAGTGATTACCGGCCAATTATGAAGAATGTGACCA
AGCAGATTGCAGAGTACAATAAAACCATTGTGGAAGCTCTGCGTAGCATGAGCAGAACC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.17 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.26 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.05 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
