RetrogeneDB ID:
retro_ecab_168
Organism:
Horse ( Equus_caballus )
Location:
1:66679780-66680181 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
78.01 %
Coverage:
53.03 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_168
GTTGATATCAAGACTACCAATGGTTATTTGCCTCGTCTTCTCTGTGTTGGTTTTACTAAA
AAACACAACAATCAGATTCAGTAGACCTCTTATGCTCAGCACCAACAGGCGTGCCAAATC
TGGAAGAAGATGATGGAAGTCATGACCCAAGAGGTACAGACAGATGACTTGAAAGAAGTA
GTCAGTAAACTGATTCCAGACAGCATTGGAAAGACACAGAAAAGGCTTGCCAATCTATTT
ATCCACTCCATGATGTCTTAGTTGGAAAAGTAAAAATGCTGAAGAAGCCCAAGTTTGAAC
TGGGAAAAGTCATGGAGTTTCATGGAGAAGGTTGTGGAAAAGCTACTGGGGATGAGACAG
GTGCTAAAGATGAATGCAAGCCACCAGCCCAAGAATCTGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGK-DIEKACQSIYPLHDVFVRKVKMLKKPKF
VD.KTT.GYL.RL.CVGFTKK.NNQI..TSYAQHQQ..QI.KKMME.MT.EVQT.DLKEVV.KLIPDSIGK.D.EKACQSIYPLHDV.V.KVKMLKKPKF
Retrocopy
VDIKTTNGYLPRLLCVGFTKKHNNQIQ*TSYAQHQQACQIWKKMMEVMTQEVQTDDLKEVVSKLIPDSIGK/DTEKACQSIYPLHDVLVGKVKMLKKPKF


Parental protein
ELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV
ELGK.ME.HGEG...GKATGDETGAK....D...PP.QESV
Retrocopy
ELGKVMEFHGEG--CGKATGDETGAK----DECKPPAQESV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide