RetrogeneDB ID:
retro_ecab_169
Organism:
Horse ( Equus_caballus )
Location:
1:66681644-66682014 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.77 %
Coverage:
99.19 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
GLRX2
Parental gene aliases:
No gene alias available
Parental gene description:
glutaredoxin 2 [Source:HGNC Symbol;Acc:16065]

Genomic region (view in browser)





>retro_ecab_169
ATGGAGAACGGCACATCACCATCTTTGGGGAAGTCAGCAATTGCTCCTGTGAATCGGATC
CAAGTAACGACTTCTGATAATTGTGTGGTAATTTTCTCAAAAATATCTCATTCTTACTGT
ACAATGGCAAAAAAAACTTTTCCATTACACAAATGTTAATTATAAAGTGGTAGAATTGGA
CATACTTGAATATGGAAGCCAGTTTCAAGATGTTCTTTACAAAATGACTGGTGAAAGAAC
TGTGCCAAGAATATTTGTCAATGTAACTTTTATTGGAGTTGCAACTGACACTGATAAGCT
CCGCAAAGAAGGGAAATTGTGTCCACTAGTTCATCAGTGTTCTTTCTTTTAAAAAAGTAA
GAAGAATTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGNITSSSLGNSATAPVNQIQETISDNCVVIFSKTSCSYCTMAKK-LFHDINVNYKVVELDMLEYGSQFQDALYKMTGDRTVPRIFVNGTFIGGATDTHR
M.N.TS.SLG.SA.APVN.IQ.T.SDNCVVIFSK.S.SYCTM....LFH..NVNYKVVELD.LEYGSQFQD.LYKMTG.RTVPRIFVN.TFIG.ATDT..
Retrocopy
MENGTSPSLGKSAIAPVNRIQVTTSDNCVVIFSKISHSYCTMXXX\LFHYTNVNYKVVELDILEYGSQFQDVLYKMTGERTVPRIFVNVTFIGVATDTDK


Parental protein
LHKEGKLLPLVQQCYLKKSEREDF
L.KEGKL.PLV.QC.........F
Retrocopy
LRKEGKLCPLVHQCSFF*KSKKNF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide