RetrogeneDB ID:
retro_ecab_17
Organism:
Horse ( Equus_caballus )
Location:
Un0608:6503-7487 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
99.08 %
Coverage:
99.69 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_17
ATGAGTTTTCTTGGAGGCTCTTTTGGTCCCATTTGTGAGGTCGATGTTGTCCTTAATGAT
GGGGAAACCAGGAAAATGGCAGAAATGAAAACTGAAGATGGCAAAGTAGAAAAACACTAT
CTTTTCTATGATGGAGAATCTGTTTCGGGAAAGGTAAACCTAGCCTTTAAGCAACCTGGA
AAGAGGCTAGAGCACCAAGGAATTAGAATTGAATTTGTAGGTCAAATTGAACTTTTCAAT
GACAAGAGTAATACTCACGAATTTGTAAACCTAGTGAAAGAACTGGCCTTACCTGGAGAA
CTGACTCAGAGCAGAAGTTATGATTTTGAATTTATGCAAGTTGAAAAGCCATATGAATCT
TACATCGGTGCCAATGTCCGCTTGAGGTATTTTCTTAAAGTGACAATAGTAAGAAGACTG
ACAGACTTGGTAAAAGAATATGATCTTATTGTTCACCAGCTTGCCACCTATCCTGATGTT
AACAACTCTATTAAGATGGAAGTGGGCATTGAAGATTGTCTACATATAGAATTTGAATAT
AATAAATCAAAGTATCATTTAAAGGATGTGATTGTTGGAAAAATTTACTTCTTATTAGTA
AGAATAAAAATCCAACATATGGAGTTACAGCTGATCAAAAAAGAGATCACAGGAATTGGA
CCCAGTACCACAACAGAAACGGAAACAATTGCTAAATATGAAATAATGGATGGTGCACCA
GTAAAAGGTGAATCAATTCCAATACGACTATTTTTAGCAGGATATGACCCAACTCCAACA
ATGAGAGATGTGAACAAAAAATTTTCCGTAAGGTACTTTTTGAATCTAGTCCTTGTTGAT
GAGGAAGACAGAAGGTACTTCAAGCAGCAGGAAATCATTTTATGGAGAAAAGCTCCTGAA
AAACTGAGGAAACAGAGAACAAACTTTCACCAGCGATTTGAATCTCCAGAATCACAGGCA
TCTGCTGAACAGCCTGAAATGTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.46
SRP021940_cerebellum 0.5
SRP021940_embryo 0.62
SRP021940_placental_villous 1.48
SRP021940_synovial_membrane 0.47
SRP021940_testis 3.56

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SFLGGFFGPICEIDVVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGEL
SFLGG.FGPICE.DVVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGEL
Retrocopy
SFLGGSFGPICEVDVVLNDGETRKMAEMKTEDGKVEKHYLFYDGESVSGKVNLAFKQPGKRLEHQGIRIEFVGQIELFNDKSNTHEFVNLVKELALPGEL


Parental protein
TQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVK-YDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVR
TQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVK.YDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVR
Retrocopy
TQSRSYDFEFMQVEKPYESYIGANVRLRYFLKVTIVRRLTDLVKEYDLIVHQLATYPDVNNSIKMEVGIEDCLHIEFEYNKSKYHLKDVIVGKIYFLLVR


Parental protein
IKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPEK
IKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPEK
Retrocopy
IKIQHMELQLIKKEITGIGPSTTTETETIAKYEIMDGAPVKGESIPIRLFLAGYDPTPTMRDVNKKFSVRYFLNLVLVDEEDRRYFKQQEIILWRKAPEK


Parental protein
LRKQRTNFHQRFESPESQASAEQPEM
LRKQRTNFHQRFESPESQASAEQPEM
Retrocopy
LRKQRTNFHQRFESPESQASAEQPEM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide