RetrogeneDB ID:
retro_ecab_171
Organism:
Horse ( Equus_caballus )
Location:
1:67656954-67657374 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
92.14 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
Profilin [Source:UniProtKB/TrEMBL;Acc:F6UJ33]

Genomic region (view in browser)





>retro_ecab_171
GTGGCCAGGTGGAATGCCTACATCGACAACCTCATGGCGGACGGGACCTGTCAGGACGCG
GCCATCGTGGGCTATAAGGACTTGCCCTCCGTTTGGGCCGCCGTCCCCGGGAAAACCTTC
ATCAACATCACGCCAGCTGAGGTTGGTGTCCTGGTTAGCAAAGACCGGTCAAGTTTTTTC
GTGAATGGGCTGACTCTTGAGGGCCAGAAATGTCCTGTGATCCGGGACTCACTGCTGCAG
GATGGGGAATTTACCGTGGATCTTCGTACCAAGAGCACCGGCGGATCCCCCACCTTCAAC
ATCACTGTCACCATGACTGCCAAGACGCTAGTCCTGTTGATGGGCAAAGAAGGTGTCCAC
AGTGGTATGATCAACAAGAAATGTTATGAAATGGCCTCCCACCTGTGGCGTTCCCAGTAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.0
SRP021940_embryo 0.74
SRP021940_placental_villous 0.36
SRP021940_synovial_membrane 0.49
SRP021940_testis 0.24

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAGWNAYIDNLMADGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLVGKDRSSFFVNGLTLGGQKCSVIRDSLLQDGEFTMDLRTKSTGGAPTFN
.A.WNAYIDNLMADGTCQDAAIVGYKD.PSVWAAVPGKTF.NITPAEVGVLV.KDRSSFFVNGLTL.GQKC.VIRDSLLQDGEFT.DLRTKSTGG.PTFN
Retrocopy
VARWNAYIDNLMADGTCQDAAIVGYKDLPSVWAAVPGKTFINITPAEVGVLVSKDRSSFFVNGLTLEGQKCPVIRDSLLQDGEFTVDLRTKSTGGSPTFN


Parental protein
ITVTMTAKTLVLLMGKEGVHGGMINKKCYEMASHLRRSQY
ITVTMTAKTLVLLMGKEGVH.GMINKKCYEMASHL.RSQY
Retrocopy
ITVTMTAKTLVLLMGKEGVHSGMINKKCYEMASHLWRSQY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide