RetrogeneDB ID:
retro_ecab_173
Organism:
Horse ( Equus_caballus )
Location:
1:70373852-70374345 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.45 %
Coverage:
55.03 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_173
CTTAATGCAATTTTCCCAAATGGAGCAACCTATTGTCCGGGATGTGTGAATTCCGACTGT
TGGTACTTGTACAGTCTGGGTTTCCCAGAGACTCAGGTCATCAATTAGCCAGATCAGACC
CTGGAAATACTGATGCATGAGCTTGACCCAGAAGTTATGGACCAATTCTACATGAAAGAT
GGTGCTACTGCAAAAGATGTTATTTGTGAGAGTGGAATTTGTGACCTGATGCCAGGTTCT
GGCCCTGATGTCACACTGTTCAATGCCTGTGGGTATTCAATGAATGGAAAGTAATCAGAG
AGAACTTATTGGACTATTCATATCACTCCAGGAGCAGAATTTTCTTGTGGTAGCTTTCAA
ATAAACTTCAGTCAGGAACTGTTATAATGACCTGATTGGGAAAGTCACGAGAGTCTTTAA
GCCAGGAAAATATGTGACCACCATTTGTCTCTCAGAGTTCTAAATATCCCACAGTGCTAT
CTTTGCTCCAGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LNAIFPNGAAYCMGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSD
LNAIFPNGA.YC.G..NSDCWYLY.L.FPE..VI..PDQTLEILM.ELDP.VMDQFYMKDG.TAKDV..ESGI.DL.PGS..D.T.FN.CGYSMNG..S.
Retrocopy
LNAIFPNGATYCPGCVNSDCWYLYSLGFPETQVIN*PDQTLEILMHELDPEVMDQFYMKDGATAKDVICESGICDLMPGSGPDVTLFNACGYSMNGK*SE


Parental protein
GTYWTIHITPEPEFSYVSFETNLSQ-TSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCRTVLSSPQ
.TYWTIHITP..EFS..SF..N.SQ...Y.DLI.KV..VFKPGK.VTT...............P.
Retrocopy
RTYWTIHITPGAEFSCGSFQINFSQ\NCYNDLIGKVTRVFKPGKYVTTICLSEF*ISHSAIFAPE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide