RetrogeneDB ID:
retro_ecab_174
Organism:
Horse ( Equus_caballus )
Location:
1:78145488-78145991 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
58.66 %
Coverage:
59.52 %
Frameshifts:
7
Stop codons:
1


Parental gene:
Parental gene symbol:
C9orf78
Parental gene aliases:
No gene alias available
Parental gene description:
chromosome 9 open reading frame 78 [Source:HGNC Symbol;Acc:24932]

Genomic region (view in browser)





>retro_ecab_174
CAGATGAAAACAGGTGGTATGGACGACATGAGGAGACTGAAGGACAGAGGCACAGAAAAG
ATCAGTAGAGAGGAAGACCCCACCTGAGGACATCATTTTGTGCAGAAACCAACTGACGGC
ACAAGGCTGCACACATGATGAAGAGTGTTAAGATGAAGGTGAAGAGGAAAGGGATCATAG
AACACAGGAGCAGAAAATCAACTCCAAGAATGCAGATCATATGCCTATGAACTTGTAGAA
AACCTCCATGCTTCCTCAGCAAAGAAGACTGTAGAATATCTTCCAAGTGGATGCTGAGCA
GCATCCCCATTGTAGGCCTCCACATGATGCTAAAATAAGAAATATTTTCATGGAGGATGC
TAAGGCTCAGCTGCTGGCAGAGCAGCAGAACAGAAGAAAGACAGTGAGACATTCTGTGGG
TCTACTATTGTGGCTGTGAGTTATGGGCAGCAAACCAATCTTATCACCAGGTTTTCAATG
CCCCTAGACGGAGAACAAAGGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QMKTGGMVDMKKLKERGKDKISEEED-LHLGTSFSAETNRRDEDADMMKYIETELKKRKGIVEH-EEQKVKPKNAE-DCLYELPENIRVSSAKKTEEML-
QMKTGGM.DM..LK.RG..KIS.EED..HL.TSF.AETN.R...A.MMK.......KRKGI.EH..EQK...KNA.....YEL.EN...SSAKKT.E.L.
Retrocopy
QMKTGGMDDMRRLKDRGTEKISREED/PHLRTSFCAETN*RHKAAHMMKSVKMKV-KRKGIIEH/QEQKINSKNAD/SYAYELVENLHASSAKKTVEYL/


Parental protein
SNQMLSGIPEVDLGI-DAKIKNIISTEDAKARLLAEQQNK-KKDSETSFVPTNMAVNYVQH-NRFYHEELNAPIRRNKE
S..MLS.IP.V.L...DAKI.NI...EDAKA.LLAEQQN..KKDSET....T..AV.Y.Q..N..YH...NAP.RR.K.
Retrocopy
SKWMLSSIPIVGLHM/DAKIRNIF-MEDAKAQLLAEQQNR/KKDSETFCGSTIVAVSYGQQ/NQSYHQVFNAPRRRTKD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide