RetrogeneDB ID:
retro_ecab_176
Organism:
Horse ( Equus_caballus )
Location:
1:85331790-85332625 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.93 %
Coverage:
100.0 %
Frameshifts:
6
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_176
ATGAGGAGACAAAGAATATATTCTAAGCAAGGGAACAAGACAAAGCCCCAGAAAAAGTGC
TAAATGAAACAAATAAATAGTCTACCTGAAAAAGAGTTCAAGCAAAAAGTCATAAGGATG
CTCACTGATCTTTGCAGAAGAATGGATGAACACAGTGAGAGCATCAACAAAATATTAAAA
AATATAAAAAAGCACCAATCAGAAATGAAGAATACAATACTGGAAATGAAAAATTCACTA
GAAGAACTCAATAGTAGAGTAGATGATACAGAAGAATGGATCAGTGAGCTGGATGAAAGA
CTAGAGGAAATCATCCAAGCTGAACAGATAAAAAAGAATTAAAAAGAATGAGAACAAGCT
AGGGGTACTCTGGGACAACATCAAGTGCACTAACATGCATATTATGGTGTCTCAGAAGGA
GAGAAGAGAGAGACAAAGGGGCAGAGAATCTATTTGAAGACATAGTAGCTGAAAACTTTT
TAACCTAAGGAAGGAAACAGCCATCTAGGTCCTGGAGGCATAGAGAGCACCAAACAAGAT
AAACTCAAAGAGGCCCACACCAAGACACATTATAATTAAAATGTCCAAAATTAAAGTTAA
AGAGACAATCCTAAAAGCTTCAAGAGAAAGGCAACAAGTGACATACAAAGGAAATCCCAT
AAGGCTTTCAGCTGACTTCTCAGAGAAACTTTACGGCACAGAAGGGAGTGGCATGATATA
TTTAAAGTCCTGAAAGGAAAAAAATCTACAGCCAAGAATATTCTACCCAGCCAGGTTATC
ATTCAGAATGGAAGGAGAGAGAAAACGTTTCCCAGACAAGCAAAAATTAAAGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKKSQSEMKSTILKMKNSLEGLNSRVDDTEEWIKKLDE
MRRQR...........P.K.....Q...LP.KEFKQK.IRML.DL.RRMD.HSE..N.........QSEMK.TIL.MKNSLE.LNSRVDDTEEWI..LDE
Retrocopy
MRRQR-IYSKQGNKTKPQKKC*MKQINSLPEKEFKQKVIRMLTDLCRRMDEHSESINXXXXXXXXHQSEMKNTILEMKNSLEELNSRVDDTEEWISELDE


Parental protein
KLEEI-SQVNQVKEKTILKNDSKIKELWDNIKHANIRII-SVPGGEERH-KGE-ENLFEEIIDENFP-NLRKETDIQVQEEQRAPNKSSPKRPTPIHIII
.LEEI.S..N..K...I.KN..K...LWDNIK..N..I...V..GE.R..KG..ENLFE.I..ENF..NLRKET.I.V.E..RAPNK...KRPTP.HIII
Retrocopy
RLEEI\SKLNR*KR--IKKNENKLGVLWDNIKCTNMHIM/GVSEGEKRETKGQ/ENLFEDIVAENFL/NLRKETAI*VLEA*RAPNKINSKRPTPRHIII


Parental protein
KMSKIKDKERILKAARERPEVTYKGKPIRLSADFS-AETLQATREWHDIFKVLKG-KNLQPRIFYPSRSSFRMEGEIKRFPDKQNVKE
KMSKIK.KE.ILKA.RER..VTYKG.PIRLSADFS..ETL...REWHDIFKVLKG.KNLQPRIFYP.R.SFRMEGE.KRFPDKQ..KE
Retrocopy
KMSKIKVKETILKASRERQQVTYKGNPIRLSADFS/RETLRHRREWHDIFKVLKG\KNLQPRIFYPARLSFRMEGERKRFPDKQKLKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide