RetrogeneDB ID:
retro_ecab_177
Organism:
Horse ( Equus_caballus )
Location:
1:87993545-87994574 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.91 %
Coverage:
99.71 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
B4GALT4
Parental gene aliases:
No gene alias available
Parental gene description:
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 4 [Source:HGNC Symbol;Acc:927]

Genomic region (view in browser)





>retro_ecab_177
ATGGGCTGCAATGTGACTTTCCACCTTTCTTACAAATTCCGGTTACCGTTGCTTCTTACC
TTATGCCTGACGGTGGTTGGGTGGGCCACCAGGAACTACTTTGTAGCTGCTATTCAAGAG
ATTCCTAAAGCAAAGGATTTCATGCCTAATTTCAACAACCCTCTCGTTTTGGAGAAGAAA
CAAACTCTGACCAATGAAGCATCCACGACAACTGCAAACCTTGACAACTGCCCTTCCATG
TCTCCATACCTCAGAGGCCAGAACAAGCTCTTTTTCAAACCGGATCTCACTCTGGAAGAA
GTGCAGGCAGAAAACCCCAACGTGCGCAGAGGACACTATCGCCCGAGGAATGCAGGGCTC
TGCAGCGGGTCGCCATCCTCATTCCACACCGGAACAGGGAGAAGCACCTGATGTACCTGC
TGGAACACCTTCATCCCTTTTTGCATCGGCAGCAGCTGGAGTACGGCATCTTTGTCATCC
ACCAGGCTGGAAGTAAAAAGTTTAATTGAGCCAAACTCTTGAATGTGGGCTATCTAGAAG
CTCTCAAGGATGAAAATTGGGACTGCTTTATATTCCACGATGTGGATCTGGTGCCGGAGA
ATGACCTGAACCTTTACAAGTGTGAGGATCAGCCCAAGCATCTGGTGGTTGGCAGGAACA
GCACTGGATACAGGTTACGTTACAGCGGATATTTTTGGGGGCGTTACTGCCCTAAGCAGA
GAACAATTTTTCGAGGTGAAGGGATTCTCTAACAACTACTGGGGATGGGGAGGCGAAGAC
GATGACCTCAGACTCAGGGTTGAGCTTCATAGAATGAAAATAATCCGGCCAATGCCTGAA
GTGAGTAAATACACGATGATCTTCCATACCAGAGACCAAGGCAATGAAGTGAACACAGAG
CGGATGAAGCTCTTACATCAAGTGTTACGAGTCTGGAGAACAGATGGGTTGACCAGTTGT
GTTTATAAATTACTCTGTGTGGATTATAATCCTCTGTATATCAACATCACAGTGGATTTC
TGGTCTGGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGCSVTFHLSYKFRLLLLLTLCLMVVGWATSNYFVAALQEIPKAKDFMANFNNPLVLEKKQTLTNEASTTTANLDNCPSMSPYLRGQNKLFFKPDLTLEE
MGC.VTFHLSYKFRL.LLLTLCL.VVGWAT.NYFVAA.QEIPKAKDFM.NFNNPLVLEKKQTLTNEASTTTANLDNCPSMSPYLRGQNKLFFKPDLTLEE
Retrocopy
MGCNVTFHLSYKFRLPLLLTLCLTVVGWATRNYFVAAIQEIPKAKDFMPNFNNPLVLEKKQTLTNEASTTTANLDNCPSMSPYLRGQNKLFFKPDLTLEE


Parental protein
VQAENPNVRRGRYHP-EECRALQRVAILIPHRNREKHLMYLLEHLHPFLQRQQLEYGIYVIHQAGSKKFNRAKLLNVGYLEALKDENWDCFIFHDVDLVP
VQAENPNVRRG.Y.P.EECRALQRVAILIPHRNREKHLMYLLEHLHPFL.RQQLEYGI.VIHQAGSKKFN.AKLLNVGYLEALKDENWDCFIFHDVDLVP
Retrocopy
VQAENPNVRRGHYRP/EECRALQRVAILIPHRNREKHLMYLLEHLHPFLHRQQLEYGIFVIHQAGSKKFN*AKLLNVGYLEALKDENWDCFIFHDVDLVP


Parental protein
ENDLNLYKCEDQPKHLVVGRNSTGYRLRYSGYF-GGVTALSREQFFKVNGFSNNYWGWGGEDDDLRLRVQLHRMKIIRPMPEVGKYTMIFHTRDQGNEVN
ENDLNLYKCEDQPKHLVVGRNSTGYRLRYSGYF.GGVTALSREQFF.V.GFSNNYWGWGGEDDDLRLRV.LHRMKIIRPMPEV.KYTMIFHTRDQGNEVN
Retrocopy
ENDLNLYKCEDQPKHLVVGRNSTGYRLRYSGYF\GGVTALSREQFFEVKGFSNNYWGWGGEDDDLRLRVELHRMKIIRPMPEVSKYTMIFHTRDQGNEVN


Parental protein
IERMKLLHQVSRVWRTDGLSSCVYKLLSVDYNPLYINITVDFWSG
.ERMKLLHQV.RVWRTDGL.SCVYKLL.VDYNPLYINITVDFWSG
Retrocopy
TERMKLLHQVLRVWRTDGLTSCVYKLLCVDYNPLYINITVDFWSG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide