RetrogeneDB ID:
retro_ecab_178
Organism:
Horse ( Equus_caballus )
Location:
1:92866332-92866824 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SRSF3
Parental gene aliases:
No gene alias available
Parental gene description:
serine/arginine-rich splicing factor 3 [Source:HGNC Symbol;Acc:10785]

Genomic region (view in browser)





>retro_ecab_178
ATGCATCGTGATTCCTGTCCATTGGACTGTAAGGTTTATGTAGGTAATCTTGGAAACAAT
GGTAACAAGACTGAATTGGAACGAGCTTTTGGTTATTATGGACCACTCCGAAGCGTGTGG
GTTGCTAGAAACCCTCCCGGCTTTGCTTTTGTTGAATTTGAAGATCCCCGAGATGCAGCT
GATGCTGTCCGAGAGCTAGATGGGAGAACACTATGTGGCTGCCGAGTAAGAGTGGAACTG
TCTAATGGTGAAAAGAGAAGTCGAAATCGTGGTCCACCTCCCTCTTGGGGTCGCCGCCCT
CGAGATGATTATCGGAGAAGGAGTCCTCCACCTCGACGCAGATCTCCAAGACGGAGAAGC
TTCTCCCGCAGCCGGAGCAGGTCCCTTTCGAGAGATAGGAGAAGAGAGAGATCACTGTCC
CGGGAGAGAAATCATAAGCCGTCTCGATCCTTCTCTAGGTCTCGTAGCCGATCTAGGTCA
AATGAAAGGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRP
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRP
Retrocopy
MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRP


Parental protein
RDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK
RDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK
Retrocopy
RDDYRRRSPPPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide