RetrogeneDB ID:
retro_ecab_180
Organism:
Horse ( Equus_caballus )
Location:
1:109285654-109286024 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.43 %
Coverage:
97.62 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
CDK2AP2
Parental gene aliases:
No gene alias available
Parental gene description:
cyclin-dependent kinase 2 associated protein 2 [Source:HGNC Symbol;Acc:30833]

Genomic region (view in browser)





>retro_ecab_180
ATGTCCTATAAACACCTTGCCCCTGCCCCCAGCAGCACCCTTTGCTCTAGTACCCCTGGG
CCCAGCACCCAGTTCACTACAGCTGGAAGAGTCCCATTACAGTTGGCTCAGTCCCGGGAG
CCACTGCTCCTTTCAGACCATTATTTAACCACTTTGGGCCTCCCTCCATGGGCTGTGTGC
AGGCAATGAAGTCACCGAATACCCAGGGTTCCCAGAGTAGTACACAGACCTGCTGTTGGT
CACAGAGGAAATGGGTAAATAGATCTGGCCTGCCTATGATGGCAGCAAGAGTGCCACGGA
GTGCCTGAAGGGAGGCATCACACATGCCTGGGCCCTGGCCAGAGAGTGTCCAGCAGAGAC
AGAGTGGAAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSYKPIAPAPSSTPGSSTPGPGTPVPT-GSVPSPS-GSVPGAAAPFRPLFNDFGPPSMGYVQAMKPPGAQGSQST-YTDLLSVIEEMGKEIRPTYAGSKS
MSYK..APAPSST..SSTPGP.T...T.G.VP....GSVPGA.APFRPLFN.FGPPSMG.VQAMK.P..QGSQS..YTDLL.V.EEMGK.I.P.Y.GSKS
Retrocopy
MSYKHLAPAPSSTLCSSTPGPSTQFTTAGRVPLQL/GSVPGATAPFRPLFNHFGPPSMGCVQAMKSPNTQGSQSS/YTDLLLVTEEMGK*IWPAYDGSKS


Parental protein
AMERLKRGIIHARALVRECLAETERN
A.E.LK.GI.HA.AL.REC.AETE.N
Retrocopy
ATECLKGGITHAWALARECPAETEWN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide