RetrogeneDB ID:
retro_ecab_181
Organism:
Horse ( Equus_caballus )
Location:
1:110345945-110346358 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.66 %
Coverage:
50.92 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
CENPK
Parental gene aliases:
No gene alias available
Parental gene description:
centromere protein K [Source:HGNC Symbol;Acc:29479]

Genomic region (view in browser)





>retro_ecab_181
TCAGTGAATCAGCAAGATATCTATCCAGACAGCACTACAGATGCAGAAGATGTTAAGTTG
TTGAAGAAGAACTCACGAAAGAATGTAAAGAAACATGGAATGATATGGAAGAATGTCAGA
ATCAATTATCTCTTCTTGGAACTGAGACACTCACTGATTCAAATGCTCAGTTATCATTGT
TAACTCTGCAAGTAAAATATCTGACCACCGAATTCAGTTAATGGTAGAAAGAAACTCCTG
AAATAATTCCACTGAATGAAGATGTTCTGGTAGCGTTAGGAAAAGGAGAGTTCCAAAAAC
TGAGATATGATCTTGAAATGGCACTTTCTACTATTCAGTCAAAGAATGGAAAGTTACAGG
AAGACTTGGAAACAGAATAACAATGGTTAGATGAACAGCAATAGATACTGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SVNQQDLDPDSTTEVEDVT-DAEEELIKECEELWKDMEECQNKLSLVGTETLTESNAQLSLLIMQMKCLTAELSQWQKETPKIIPLNEEVLLTLGKEEFQ
SVNQQD..PDSTT..EDV....EEEL.KEC.E.W.DMEECQN.LSL.GTETLT.SNAQLSLL..Q.K.LT.E.S.W.KETP.IIPLNE.VL..LGK.EFQ
Retrocopy
SVNQQDIYPDSTTDAEDVK/VVEEELTKECKETWNDMEECQNQLSLLGTETLTDSNAQLSLLTLQVKYLTTEFS*W*KETPEIIPLNEDVLVALGKGEFQ


Parental protein
KLRHDLELVLSTIQSKNEKLKEDLEREQQWLKEQQQLLE
KLR.DLE..LSTIQSKN.KL.EDLE.E.QWL.EQQ..LE
Retrocopy
KLRYDLEMALSTIQSKNGKLQEDLETE*QWLDEQQ*ILE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide